Evidence map›Paper›PMID 24164389›Full record

ArticleEvolution; international journal of organic evolution2014

Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast.

Aymé Spor, Daniel J Kvitek, Thibault Nidelet, Juliette Martin, Judith Legrand, Christine Dillmann, Aurélie Bourgais, Dominique de Vienne, Gavin Sherlock, Delphine Sicard

Abstract read
In one paragraph

Article in Evolution; international journal of organic evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. The genetic foundations of convergent traits.Nature reviews. Genetics · 2026
    Review
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  9. Genomic basis of parallel adaptation varies with divergence inProceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Aymé Spor *Univ Paris-Sud, UMR de Génétique Végétale, INRA / Univ Paris-Sud / CNRS, Ferme du Moulon, Gif-sur-Yvette, F-91190, France.
Daniel J Kvitek *Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Thibault NideletINRA, UMR 1083, F-34060 Montpellier, France.
Juliette MartinUniversité Lyon 1; CNRS, UMR 5086; Bases Moléculaires et Structurales des Systèmes Infectieux, IBCP, 7 passage du, Vercors F-69367, France.
Judith LegrandUniv Paris-Sud, UMR de Génétique Végétale, INRA / Univ Paris-Sud / CNRS, Ferme du Moulon, Gif-sur-Yvette, F-91190, France.
Christine DillmannUniv Paris-Sud, UMR de Génétique Végétale, INRA / Univ Paris-Sud / CNRS, Ferme du Moulon, Gif-sur-Yvette, F-91190, France.
Aurélie BourgaisCNRS, UMR de Génétique Végétale, INRA / Univ Paris-Sud / CNRS, Ferme du Moulon, Gif-sur-Yvette, F-91190, France.
Dominique de VienneUniv Paris-Sud, UMR de Génétique Végétale, INRA / Univ Paris-Sud / CNRS, Ferme du Moulon, Gif-sur-Yvette, F-91190, France.
Gavin SherlockDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Delphine SicardUniv Paris-Sud, UMR de Génétique Végétale, INRA / Univ Paris-Sud / CNRS, Ferme du Moulon, Gif-sur-Yvette, F-91190, France.

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Molecular Characterization of Adaptive EvolutionR01HG003328 · NHGRI · STANFORD UNIVERSITY · PI SHERLOCK, GAVIN J · 2005 to 2015
$4.1M
NHGRI NIH HHS R01 HG003328NHGRI NIH HHS T32 HG000044
6 · The paper itself

Abstract

Different organisms have independently and recurrently evolved similar phenotypic traits at different points throughout history. This phenotypic convergence may be caused by genotypic convergence and in addition, constrained by historical contingency. To investigate how convergence may be driven by selection in a particular environment and constrained by history, we analyzed nine life-history traits and four metabolic traits during an experimental evolution of six yeast strains in four different environments. In each of the environments, the population converged toward a different multivariate phenotype. However, the evolution of most traits, including fitness components, was constrained by history. Phenotypic convergence was partly associated with the selection of mutations in genes involved in the same pathway. By further investigating the convergence in one gene, BMH1, mutated in 20% of the evolved populations, we show that both the history and the environment influenced the types of mutations (missense/nonsense), their location within the gene itself, as well as their effects on multiple traits. However, these effects could not be easily predicted from ancestors' phylogeny or past selection. Combined, our data highlight the role of pleiotropy and epistasis in shaping a rugged fitness landscape.

Indexed as

Evolution, MolecularGene-Environment InteractionSelection, Genetic14-3-3 ProteinsEnvironmentGenotypeMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins14-3-3 ProteinsBMH1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins14-3-3 proteinAdaptive landscapeexperimental evolutionlife-history evolutionpleiotropy

Identifiers

PMID24164389
PMCPMC4439200

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.