Evidence map›Paper›PMID 24163365›Full record

ArticleThe Journal of biological chemistry2013

The yeast anaerobic response element AR1b regulates aerobic antifungal drug-dependent sterol gene expression.

Christina Gallo-Ebert, Melissa Donigan, Hsing-Yin Liu, Florencia Pascual, Melissa Manners, Devanshi Pandya, Robert Swanson, Denise Gallagher, Weiwei Chen, George M Carman and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.1field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Christina Gallo-EbertFrom the Institute of Metabolic Disorders, Genesis Biotechnology Group, Hamilton, New Jersey 08691.
Melissa Donigan
Hsing-Yin Liu
Florencia Pascual
Melissa Manners
Devanshi Pandya
Robert Swanson
Denise Gallagher
Weiwei Chen
George M Carman
Joseph T Nickels
Genesis HealthCare · USGenesis Research Institute · JPRutgers, The State University of New Jersey · US

Funding

Phospholipid metabolism and membrane functionR37GM028140 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI CARMAN, GEORGE M. · 2010 to 2019
$4.0M
PHOSPHOLIPID METABOLSIM AND MEMBRANE FUNCTIONR01GM028140 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI CARMAN, GEORGE M. · 1985 to 2009
$3.2M
Mechanisms Regulating Sterol BiosynthesisR01HL067401 · NHLBI · DREXEL UNIVERSITY · PI NICKELS, JOSEPH THOMAS · 2002 to 2005
$1.1M
NHLBI NIH HHS HL67401NHLBI NIH HHS R01 HL067401NIGMS NIH HHS GM28140NIGMS NIH HHS R01 GM028140NIGMS NIH HHS R37 GM028140
6 · The paper itself

Abstract

Saccharomyces cerevisiae ergosterol biosynthesis, like cholesterol biosynthesis in mammals, is regulated at the transcriptional level by a sterol feedback mechanism. Yeast studies defined a 7-bp consensus sterol-response element (SRE) common to genes involved in sterol biosynthesis and two transcription factors, Upc2 and Ecm22, which direct transcription of sterol biosynthetic genes. The 7-bp consensus SRE is identical to the anaerobic response element, AR1c. Data indicate that Upc2 and Ecm22 function through binding to this SRE site. We now show that it is two novel anaerobic AR1b elements in the UPC2 promoter that direct global ERG gene expression in response to a block in de novo ergosterol biosynthesis, brought about by antifungal drug treatment. The AR1b elements are absolutely required for auto-induction of UPC2 gene expression and protein and require Upc2 and Ecm22 for function. We further demonstrate the direct binding of recombinant expressed S. cerevisiae ScUpc2 and pathogenic Candida albicans CaUpc2 and Candida glabrata CgUpc2 to AR1b and SRE/AR1c elements. Recombinant endogenous promoter studies show that the UPC2 anaerobic AR1b elements act in trans to regulate ergosterol gene expression. Our results indicate that Upc2 must occupy UPC2 AR1b elements in order for ERG gene expression induction to take place. Thus, the two UPC2-AR1b elements drive expression of all ERG genes necessary for maintaining normal antifungal susceptibility, as wild type cells lacking these elements have increased susceptibility to azole antifungal drugs. Therefore, targeting these specific sites for antifungal therapy represents a novel approach to treat systemic fungal infections.

Indexed as

Genes, FungalResponse ElementsAerobiosisAnaerobiosisAntifungal AgentsCandida albicansCandida glabrataErgosterolGene Expression Regulation, FungalLovastatinMixed Function OxygenasesPromoter Regions, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSterolsTrans-ActivatorsAntifungal AgentsERG25 protein, S cerevisiaeErgosterolLovastatinMixed Function OxygenasesSaccharomyces cerevisiae ProteinsSterolsTrans-ActivatorsUPC2 protein, S cerevisiaeAerobicAnaerobicAzoleCandida albicansLipidLipidsPromoterSterolTranscriptionYeast

Identifiers

PMID24163365
PMCPMC3853293
OpenAlexW2113524772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.