Evidence map›Paper›PMID 24161570›Full record

ArticleMechanisms of development2014

Loss of Sip1 leads to migration defects and retention of ectodermal markers during lens development.

Abby L Manthey, Salil A Lachke, Paul G FitzGerald, Robert W Mason, David A Scheiblin, John H McDonald, Melinda K Duncan

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
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  11. Fibronectin has multifunctional roles in posterior capsular opacification (PCO).Matrix biology : journal of the International Society for Matrix Biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Abby L MantheyDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
Salil A LachkeDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19716, USA.
Paul G FitzGeraldDepartment of Cell Biology and Human Anatomy, School of Medicine, University of California, Davis, CA 95616, USA.
Robert W MasonDepartment of Biomedical Research, Alfred I duPont Hospital for Children, Wilmington, DE 19803, USA.
David A ScheiblinDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
John H McDonaldDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
Melinda K DuncanDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA. Electronic address: duncanm@udel.edu.
University of Delaware · USAlfred I. duPont Hospital for Children · USUniversity of California, Davis · US

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Anjana Narayan Bhat · 2012 to 2026
$67.2M
VOLUMETRIC BREAST DENSITY ESTIMATION USING BREAST SURFACE RECONSTRUCTEDP20RR016472 · NCRR · UNIVERSITY OF DELAWARE · PI STEINER, KARL V. · 2001 to 2011
$37.6M
VISION RESEARCH CORE GRANTP30EY012576 · NEI · UNIVERSITY OF CALIFORNIA DAVIS · PI LISA M OAKES · 1999 to 2026
$18.9M
Center for Pediatric ResearchP20GM103464 · NIGMS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI SHAFFER, THOMAS H · 2012 to 2014
$5.6M
POST TRANSCRIPTIONAL CONTROL OF GENE EXPRESSION IN THE LENS (LENS GENE EXPRESSIONR01EY021505 · NEI · WASHINGTON UNIVERSITY · PI LACHKE, SALIL · 2011 to 2024
$5.3M
The Regulation of Lens Fiber Cell DifferentiationR01EY012221 · NEI · UNIVERSITY OF DELAWARE · PI DUNCAN, MELINDA K · 1998 to 2012
$3.7M
Acquisition of a Zeiss LSM710 Confocal MicroscopeS10RR027273 · NCRR · UNIVERSITY OF DELAWARE · PI DUNCAN, MELINDA K · 2010 to 2010
$494k
NCRR NIH HHS 5 P20 RR016472-12NCRR NIH HHS P20 RR016472NCRR NIH HHS RR027273-01NCRR NIH HHS S10 RR027273NEI NIH HHS P30 EY012576NEI NIH HHS P30-EY012576NEI NIH HHS R01 EY012221NEI NIH HHS R01 EY021505NEI NIH HHS R01EY021505-01NIGMS NIH HHS 8 P20 GM103446-12NIGMS NIH HHS 8P20GM103464-08NIGMS NIH HHS P20 GM103446NIGMS NIH HHS P20 GM103464
6 · The paper itself

Abstract

SIP1 encodes a DNA-binding transcription factor that regulates multiple developmental processes, as highlighted by the pleiotropic defects observed in Mowat-Wilson syndrome, which results from mutations in this gene. Further, in adults, dysregulated SIP1 expression has been implicated in both cancer and fibrotic diseases, where it functionally links TGFβ signaling to the loss of epithelial cell characteristics and gene expression. In the ocular lens, an epithelial tissue important for vision, Sip1 is co-expressed with epithelial markers, such as E-cadherin, and is required for the complete separation of the lens vesicle from the head ectoderm during early ocular morphogenesis. However, the function of Sip1 after early lens morphogenesis is still unknown. Here, we conditionally deleted Sip1 from the developing mouse lens shortly after lens vesicle closure, leading to defects in coordinated fiber cell tip migration, defective suture formation, and cataract. Interestingly, RNA-Sequencing analysis on Sip1 knockout lenses identified 190 differentially expressed genes, all of which are distinct from previously described Sip1 target genes. Furthermore, 34% of the genes with increased expression in the Sip1 knockout lenses are normally downregulated as the lens transitions from the lens vesicle to early lens, while 49% of the genes with decreased expression in the Sip1 knockout lenses are normally upregulated during early lens development. Overall, these data imply that Sip1 plays a major role in reprogramming the lens vesicle away from a surface ectoderm cell fate towards that necessary for the development of a transparent lens and demonstrate that Sip1 regulates distinctly different sets of genes in different cellular contexts.

Indexed as

AnimalsBiomarkersCadherinsCell DifferentiationEctodermEpithelial CellsFaciesGene Expression Regulation, DevelopmentalHirschsprung DiseaseIntellectual DisabilityLens, CrystallineMiceMice, KnockoutMicrocephalyNerve Tissue ProteinsSequence Analysis, RNABiomarkersCadherinsNerve Tissue ProteinsSip1 protein, mouseEctodermal cell fateLens developmentSip1Zeb2

Identifiers

PMID24161570
PMCPMC4144920
OpenAlexW2082125951

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.