Evidence map›Paper›PMID 24158444›Full record

ArticleThe Journal of biological chemistry2013

The E3 ubiquitin ligase UBE3C enhances proteasome processivity by ubiquitinating partially proteolyzed substrates.

Bernard W Chu, Kyle M Kovary, Johan Guillaume, Ling-chun Chen, Mary N Teruel, Thomas J Wandless

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Temporal control of acute protein aggregate turnover by UBE3C and NRF1-dependent proteasomal pathways.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Bernard W ChuFrom the Department of Chemical and Systems Biology, Stanford University, Stanford, California 94305.
Kyle M Kovary
Johan Guillaume
Ling-chun Chen
Mary N Teruel
Thomas J Wandless
Stanford University · US

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2013 to 2017
$10.9M
Novel Molecules as In Vivo Biological ProbesR01GM073046 · NIGMS · STANFORD UNIVERSITY · PI WANDLESS, THOMAS JAMES · 2006 to 2017
$3.6M
Controlling the rate of adipocyte differentiation: Experiments and theoryR01DK101743 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI TERUEL, MARY N · 2015 to 2017
$1.1M
NIDDK NIH HHS R01 DK101743NIGMS NIH HHS GM073046NIGMS NIH HHS P50 GM107615NIGMS NIH HHS R01 GM073046
6 · The paper itself

Abstract

To maintain protein homeostasis, cells must balance protein synthesis with protein degradation. Accumulation of misfolded or partially degraded proteins can lead to the formation of pathological protein aggregates. Here we report the use of destabilizing domains, proteins whose folding state can be reversibly tuned using a high affinity ligand, as model substrates to interrogate cellular protein quality control mechanisms in mammalian cells using a forward genetic screen. Upon knockdown of UBE3C, an E3 ubiquitin ligase, a reporter protein consisting of a destabilizing domain fused to GFP is degraded more slowly and incompletely by the proteasome. Partial proteolysis is also observed when UBE3C is present but cannot ubiquitinate substrates because its active site has been mutated, it is unable to bind to the proteasome, or the substrate lacks lysine residues. UBE3C knockdown also results in less substrate polyubiquitination. Finally, knockdown renders cells more susceptible to the Hsp90 inhibitor 17-AAG, suggesting that UBE3C protects against the harmful accumulation of protein fragments arising from incompletely degraded proteasome substrates.

Indexed as

Protein FoldingProteolysisBenzoquinonesGene Knockdown TechniquesGreen Fluorescent ProteinsHeLa CellsHSP90 Heat-Shock ProteinsHumansLactams, MacrocyclicProteasome Endopeptidase ComplexProtein BiosynthesisUbiquitinationUbiquitin-Protein LigasesBenzoquinonesGreen Fluorescent ProteinsHSP90 Heat-Shock ProteinsLactams, MacrocyclicProteasome Endopeptidase ComplextanespimycinUBE3C protein, humanUbiquitin-Protein LigasesE3 Ubiquitin LigaseProteasomeProtein DegradationProtein ProcessingProtein Stability

Identifiers

PMID24158444
PMCPMC3843071
OpenAlexW1978577182

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.