Evidence map›Paper›PMID 24158439›Full record

ArticleThe Journal of biological chemistry2013

Structures of the Bacillus subtilis glutamine synthetase dodecamer reveal large intersubunit catalytic conformational changes linked to a unique feedback inhibition mechanism.

David S Murray, Nagababu Chinnam, Nam Ky Tonthat, Travis Whitfill, Lewis V Wray, Susan H Fisher, Maria A Schumacher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Glutamine synthetase and GlnR regulate nitrogen metabolism inApplied and environmental microbiology · 2023
    Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. TnMicrobiology spectrum · 2022
    Article
  14. Structural basis for the helical filament formation of Escherichia coli glutamine synthetase.Protein science : a publication of the Protein Society · 2022
    Article
  15. Article
  16. The Encystment-Related MicroRNAs and Its Regulation Molecular Mechanism inInternational journal of molecular sciences · 2020
    Article
  17. Article
  18. Article
  19. Variants of theFrontiers in microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

David S MurrayFrom the Department of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland, Oregon 97239.
Nagababu Chinnam
Nam Ky Tonthat
Travis Whitfill
Lewis V Wray
Susan H Fisher
Maria A Schumacher
Duke University · USBoston University · USOregon Health & Science University · US

Funding

HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
REGULATION OF NITROGEN METABOLISM IN BACILLUS SUBTILISR01GM051127 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FISHER, SUSAN H. · 1994 to 2012
$3.8M
Structural studies on the P1 plasmid partition apparatus.R01GM074815 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SCHUMACHER, MARIA · 2006 to 2009
$720k
NIGMS NIH HHS GM051127NIGMS NIH HHS GM074815NIGMS NIH HHS R01 GM051127NIGMS NIH HHS R01 GM074815NIGMS NIH HHS T32 GM008280
6 · The paper itself

Abstract

Glutamine synthetase (GS), which catalyzes the production of glutamine, plays essential roles in nitrogen metabolism. There are two main bacterial GS isoenzymes, GSI-α and GSI-β. GSI-α enzymes, which have not been structurally characterized, are uniquely feedback-inhibited by Gln. To gain insight into GSI-α function, we performed biochemical and cellular studies and obtained structures for all GSI-α catalytic and regulatory states. GSI-α forms a massive 600-kDa dodecameric machine. Unlike other characterized GS, the Bacillus subtilis enzyme undergoes dramatic intersubunit conformational alterations during formation of the transition state. Remarkably, these changes are required for active site construction. Feedback inhibition arises from a hydrogen bond network between Gln, the catalytic glutamate, and the GSI-α-specific residue, Arg(62), from an adjacent subunit. Notably, Arg(62) must be ejected for proper active site reorganization. Consistent with these findings, an R62A mutation abrogates Gln feedback inhibition but does not affect catalysis. Thus, these data reveal a heretofore unseen restructuring of an enzyme active site that is coupled with an isoenzyme-specific regulatory mechanism. This GSI-α-specific regulatory network could be exploited for inhibitor design against Gram-positive pathogens.

Indexed as

BiocatalysisFeedback, PhysiologicalProtein MultimerizationBacillus subtilisGlutamate-Ammonia LigaseGlutamineIsoenzymesKineticsModels, MolecularProtein Structure, QuaternaryProtein SubunitsGlutamate-Ammonia LigaseGlutamineIsoenzymesProtein SubunitsCooperativityEnzyme CatalysisEnzyme InactivationEnzyme MechanismsEnzyme StructureGlutamine

Identifiers

PMID24158439
PMCPMC3861631
OpenAlexW2068150231

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.