Evidence map›Paper›PMID 24157614›Full record

ArticleRNA biology2013

Depletion of hnRNP A2/B1 overrides the nuclear retention of the HIV-1 genomic RNA.

Heather Gordon, Lara Ajamian, Fernando Valiente-Echeverrìa, Kathy Lévesque, William F Rigby, Andrew J Mouland

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Let It Go: HIV-1Journal of virology · 2021
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Scaffold attachment factor B suppresses HIV-1 infection of CD4The Journal of biological chemistry · 2018
    Article
  18. Article
  19. Article
  20. Emerging Roles of NFrontiers in microbiology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Heather GordonHIV-1 RNA Trafficking Laboratory; Lady Davis Institute at the Jewish General Hospital; Montréal, Québec, Canada; Department of Microbiology & Immunology; McGill University; Montréal, Québec, Canada.
Lara AjamianHIV-1 RNA Trafficking Laboratory; Lady Davis Institute at the Jewish General Hospital; Montréal, Québec, Canada; Department of Medicine; Division of Experimental Medicine; McGill University; Montréal, Québec, Canada.
Fernando Valiente-EcheverrìaHIV-1 RNA Trafficking Laboratory; Lady Davis Institute at the Jewish General Hospital; Montréal, Québec, Canada; Department of Medicine; Division of Experimental Medicine; McGill University; Montréal, Québec, Canada.
Kathy LévesqueHIV-1 RNA Trafficking Laboratory; Lady Davis Institute at the Jewish General Hospital; Montréal, Québec, Canada; Department of Medicine; Division of Experimental Medicine; McGill University; Montréal, Québec, Canada.
William F RigbyDartmouth Medical School; Department of Medicine; Lebanon, NH, USA.
Andrew J MoulandHIV-1 RNA Trafficking Laboratory; Lady Davis Institute at the Jewish General Hospital; Montréal, Québec, Canada; Department of Microbiology & Immunology; McGill University; Montréal, Québec, Canada; Department of Medicine; Division of Experimental Medicine; McGill University; Montréal, Québec, Canada.
Jewish General Hospital · CAMcGill University · CADartmouth Hospital · GB

Funding

Canadian Institutes of Health Research MOP-38111Canadian Institutes of Health Research MOP-56974
6 · The paper itself

Abstract

hnRNP A2 is a cellular protein that is important for nucleocytoplasmic and cytosolic trafficking of the HIV-1 genomic RNA. Both hnRNP A2's interaction with HIV-1 RNA and its expression levels influence the activities of Rev in mediating nucleocytoplasmic export of the HIV-1 genomic RNA. While the lack of Rev expression during HIV-1 gene expression results in nuclear retention of HIV-1 genomic RNA, we show here by fluorescence in situ hybridization and fractionation studies that the genomic RNA translocates to the cytoplasm when hnRNP A2/B1 are depleted from cells. Polyribosome analyses revealed that the genomic RNA was shunted into a cytoplasmic, dense polyribosomal fraction. This fraction contained several RNA-binding proteins involved in viral gene expression and RNA trafficking but did not contain the translation initiation factor, eIF4G1. Amino acid incorporation into nascent polypeptides in this fraction was also greatly reduced, demonstrating that this fraction contains mRNAs that are poorly translated. These results demonstrate that hnRNP A2/B1 expression plays roles in the nuclear retention of the HIV-1 genomic RNA in the absence of Rev and in the release of the genomic RNA from translationally inactive, cytoplasmic RNP complexes.

Indexed as

Cell NucleusCytoplasmGenes, ViralHeLa CellsHeterogeneous-Nuclear Ribonucleoprotein Group A-BHIV-1HumansIn Situ Hybridization, Fluorescencerev Gene Products, Human Immunodeficiency VirusRNA, MessengerRNA TransportRNA, ViralHeterogeneous-Nuclear Ribonucleoprotein Group A-BhnRNP A2rev Gene Products, Human Immunodeficiency VirusRNA, MessengerRNA, ViralHIV-1 RNAhnRNP A2/B1nuclear retentionRNA trafficking

Identifiers

PMID24157614
PMCPMC3907481
OpenAlexW2036547488

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.