Evidence map›Paper›PMID 24157591›Full record

ArticleStem cell research2014

Patch-clamp recordings and calcium imaging followed by single-cell PCR reveal the developmental profile of 13 genes in iPSC-derived human neurons.

Glenn S Belinsky, Matthew T Rich, Carissa L Sirois, Shaina M Short, Erika Pedrosa, Herbert M Lachman, Srdjan D Antic

Abstract read
In one paragraph

Article in Stem cell research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Vesicular Glutamate Release from Feeder-FreehiPSC-Derived Neurons.International journal of molecular sciences · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Childhood-Onset Schizophrenia: Insights from Induced Pluripotent Stem Cells.International journal of molecular sciences · 2018
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Glenn S BelinskyDepartment of Neuroscience, University of Connecticut Health Center, Farmington, CT, USA.
Matthew T RichDepartment of Neuroscience, University of Connecticut Health Center, Farmington, CT, USA.
Carissa L SiroisDepartment of Neuroscience, University of Connecticut Health Center, Farmington, CT, USA.
Shaina M ShortDepartment of Neuroscience, University of Connecticut Health Center, Farmington, CT, USA.
Erika PedrosaDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, USA.
Herbert M LachmanDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, USA.
Srdjan D AnticDepartment of Neuroscience, University of Connecticut Health Center, Farmington, CT, USA. Electronic address: antic@neuron.uchc.edu.

Funding

Dopaminergic modulation of dentritic excitabilityR01MH063503 · NIMH · YALE UNIVERSITY · PI ANTIC, SRDJAN D · 2001 to 2010
$2.5M
Molecular analysis of bipolar and schizophrenia candidate genesR01MH073164 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2006 to 2012
$1.6M
Analysis of Glutamatergic Neurons Derived from Patient-Specific iPS CellsR33MH087840 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2010 to 2011
$814k
Analysis of Glutamatergic Neurons Derived from Patient-Specific iPS CellsR21MH087840 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2009 to 2009
$332k
NIMH NIH HHS MH073164NIMH NIH HHS MH087840NIMH NIH HHS R01 MH063503NIMH NIH HHS R21 MH087840NIMH NIH HHS R33 MH087840
6 · The paper itself

Abstract

Molecular genetic studies are typically performed on homogenized biological samples, resulting in contamination from non-neuronal cells. To improve expression profiling of neurons we combined patch recordings with single-cell PCR. Two iPSC lines (healthy subject and 22q11.2 deletion) were differentiated into neurons. Patch electrode recordings were performed on 229 human cells from Day-13 to Day-88, followed by capture and single-cell PCR for 13 genes: ACTB, HPRT, vGLUT1, βTUBIII, COMT, DISC1, GAD1, PAX6, DTNBP1, ERBB4, FOXP1, FOXP2, and GIRK2. Neurons derived from both iPSC lines expressed βTUBIII, fired action potentials, and experienced spontaneous depolarizations (UP states) ~2 weeks before vGLUT1, GAD1 and GIRK2 appeared. Multisite calcium imaging revealed that these UP states were not synchronized among hESC-H9-derived neurons. The expression of FOXP1, FOXP2 and vGLUT1 was lost after 50 days in culture, in contrast to other continuously expressed genes. When gene expression was combined with electrophysiology, two subsets of genes were apparent; those irrelevant to spontaneous depolarizations (including vGLUT1, GIRK2, FOXP2 and DISC1) and those associated with spontaneous depolarizations (GAD1 and ERBB4). The results demonstrate that in the earliest stages of neuron development, it is useful to combine genetic analysis with physiological characterizations, on a cell-to-cell basis.

Indexed as

Gene Expression Regulation, DevelopmentalCalciumCell DifferentiationCell LineComet AssayElectrophysiological PhenomenaErbB ReceptorsFluorescent DyesGene DeletionGlutamate DecarboxylaseHumansInduced Pluripotent Stem CellsNeuronsPatch-Clamp TechniquesPolymerase Chain ReactionReceptor, ErbB-4CalciumERBB4 protein, humanErbb4 protein, mouseErbB ReceptorsFluorescent DyesGlutamate Decarboxylaseglutamate decarboxylase 1Receptor, ErbB-4action potentialAPCCcurrent clampEBembryoid bodiesinput resistance.MEFsmouse embryonic fibroblastsNEneuroepithelial (rosettes)resting membrane potentialR(IN)VCvoltage clampV(R)

Identifiers

PMID24157591
PMCPMC3947234

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.