Evidence map›Paper›PMID 24157521›Full record

ArticleMechanisms of development2014

Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes, and their expression in response to symbiont cues.

Suzanne M Peyer, M Sabrina Pankey, Todd H Oakley, Margaret J McFall-Ngai

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Maintaining microbiota across diverse symbiotic organs inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Squid genomes in a bacterial world.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Article
  12. Eye Development inFrontiers in physiology · 2017
    Article
  13. Article
  14. Animal-microbe interactions and the evolution of nervous systems.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  15. Impact and Influence of the NaturalFrontiers in microbiology · 2016
    Review
  16. Review
  17. Article
  18. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Suzanne M PeyerSchool of Medicine and Public Health, Department of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706, United States; McPherson Eye Research Institute, University of Wisconsin, Madison, WI 53706, United States. Electronic address: smpeyer@wisc.edu.
M Sabrina PankeyDepartment of Ecology, Evolution, and Marine Biology, University of California Santa Barbara, Santa Barbara, CA 93106-9620, United States.
Todd H OakleyDepartment of Ecology, Evolution, and Marine Biology, University of California Santa Barbara, Santa Barbara, CA 93106-9620, United States.
Margaret J McFall-NgaiSchool of Medicine and Public Health, Department of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706, United States; McPherson Eye Research Institute, University of Wisconsin, Madison, WI 53706, United States. Electronic address: mjmcfallngai@wisc.edu.
University of California, Santa Barbara · USUniversity of Wisconsin–Madison · US

Funding

Vibrio fischeri as a Model for Bacterial ColonizationR37AI050661 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI MARGARET J MC FALL-NGAI, Edward G Ruby · 2018 to 2026
$5.4M
Vibrio fischeri as a model of Bacterial ColonizationR01AI050661 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2002 to 2016
$5.0M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
NIAID NIH HHS AI-50661NIAID NIH HHS R01 AI050661NIAID NIH HHS R37 AI050661NIH HHS R01 OD011024
6 · The paper itself

Abstract

The squid Euprymna scolopes has evolved independent sets of tissues capable of light detection, including a complex eye and a photophore or 'light organ', which houses the luminous bacterial symbiont Vibrio fischeri. As the eye and light organ originate from different embryonic tissues, we examined whether the eye-specification genes, pax6, eya, six, and dac, are shared by these two organs, and if so, whether they are regulated in the light organ by symbiosis. We obtained sequences of the four genes with PCR, confirmed orthology with phylogenetic analysis, and determined that each was expressed in the eye and light organ. With in situ hybridization (ISH), we localized the gene transcripts in developing embryos, comparing the patterns of expression in the two organs. The four transcripts localized to similar tissues, including those associated with the visual system ∼1/4 into embryogenesis (Naef stage 18) and the light organ ∼3/4 into embryogenesis (Naef stage 26). We used ISH and quantitative real-time PCR to examine transcript expression and differential regulation in postembryonic light organs in response to the following colonization conditions: wild-type, luminescent V. fischeri; a mutant strain defective in light production; and as a control, no symbiont. In ISH experiments light organs showed down regulation of the pax6, eya, and six transcripts in response to wild-type V. fischeri. Mutant strains also induced down regulation of the pax6 and eya transcripts, but not of the six transcript. Thus, luminescence was required for down regulation of the six transcript. We discuss these results in the context of symbiont-induced light-organ development. Our study indicates that the eye-specification genes are expressed in light-interacting tissues independent of their embryonic origin and are capable of responding to bacterial cues. These results offer evidence for evolutionary tinkering or the recruitment of eye development genes for use in a light-sensing photophore.

Indexed as

Aliivibrio fischeriAnimalsBiological EvolutionDecapodiformesEmbryonic DevelopmentEmbryo, NonmammalianEyeLightSymbiosisImmunityMicrobePhotoreceptorRetinaRhabdomereVision

Identifiers

PMID24157521
PMCPMC4000693
OpenAlexW1990896544

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.