Evidence map›Paper›PMID 24155663›Full record

ArticleInternational journal of biological sciences2013

A novel zinc finger protein 219-like (ZNF219L) is involved in the regulation of collagen type 2 alpha 1a (col2a1a) gene expression in zebrafish notochord.

Huang-Wei Lien, Chung-Hsiang Yang, Chia-Hsiung Cheng, Chin-Chun Hung, Wei-Hao Liao, Pung-Pung Hwang, Yu-San Han, Chang-Jen Huang

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Huang-Wei Lien1. Institute of Fisheries Sciences, National Taiwan University, Taipei 106, Taiwan;
Chung-Hsiang Yang
Chia-Hsiung Cheng
Chin-Chun Hung
Wei-Hao Liao
Pung-Pung Hwang
Yu-San Han
Chang-Jen Huang
Academia Sinica · TWInstitute of Biological Chemistry, Academia Sinica · TWNational Taiwan University · TWTaipei Medical University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The notochord is required for body plan patterning in vertebrates, and defects in notochord development during embryogenesis can lead to diseases affecting the adult. It is therefore important to elucidate the gene regulatory mechanism underlying notochord formation. In this study, we cloned the zebrafish zinc finger 219-like (ZNF219L) based on mammalian ZNF219, which contains nine C2H2-type zinc finger domains. Through whole-mount in situ hybridization, we found that znf219L mRNA is mainly expressed in the zebrafish midbrain-hindbrain boundary, hindbrain, and notochord during development. The znf219L morpholino knockdown caused partial abnormal notochord phenotype and reduced expression of endogenous col2a1a in the notochord specifically. In addition, ZNF219L could recognize binding sites with GGGGG motifs and trigger augmented activity of the col2a1a promoter in a luciferase assay. Furthermore, in vitro binding experiments revealed that ZNF219L recognizes the GGGGG motifs in the promoter region of the zebrafish col2a1a gene through its sixth and ninth zinc finger domains. Taken together, our results reveal that ZNF219L is involved in regulating the expression of col2a1a in zebrafish notochord specifically.

Indexed as

Amino Acid SequenceAnimalsBody PatterningCloning, MolecularCollagen Type IIGene Expression Regulation, DevelopmentalMolecular Sequence DataNotochordSequence AlignmentSequence DeletionTranscription FactorsZebrafishZebrafish ProteinsCollagen Type IITranscription FactorsZebrafish Proteinsznf219 protein, zebrafishcollagen type 2 alpha 1anotochordtranscriptional regulation.zebrafishzinc finger protein 219

Identifiers

PMID24155663
PMCPMC3805895
OpenAlexW2143380037

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.