Evidence map›Paper›PMID 24151238›Full record

ArticleProteomics2013

Selectivity analysis of single binder assays used in plasma protein profiling.

Maja Neiman, Claudia Fredolini, Henrik Johansson, Janne Lehtiö, Per-Åke Nygren, Mathias Uhlén, Peter Nilsson, Jochen M Schwenk

Open access · hybridAbstract read
In one paragraph

Article in Proteomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Maja NeimanScience for Life Laboratory, School of Biotechnology, KTH-Royal Institute of Technology, Solna, Sweden.
Claudia Fredolini
Henrik Johansson
Janne Lehtiö
Per-Åke Nygren
Mathias Uhlén
Peter Nilsson
Jochen M Schwenk
Science for Life Laboratory · SEKTH Royal Institute of Technology · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The increasing availability of antibodies toward human proteins enables broad explorations of the proteomic landscape in cells, tissues, and body fluids. This includes assays with antibody suspension bead arrays that generate protein profiles of plasma samples by flow cytometer analysis. However, antibody selectivity is context dependent so it is necessary to corroborate on-target detection over off-target binding. To address this, we describe a concept to directly verify interactions from antibody-coupled beads by analysis of their eluates by Western blots and MS. We demonstrate selective antibody binding in complex samples with antibodies toward a set of chosen proteins with different abundance in plasma and serum, and illustrate the need to adjust sample and bead concentrations accordingly. The presented approach will serve as an important tool for resolving differential protein profiles from antibody arrays within plasma biomarker discoveries.

Indexed as

Acute-Phase ProteinsAntibodies, ImmobilizedAntibody SpecificityBlood ProteinsChemokines, CCDatabases, ProteinHumansLipocalin-2LipocalinsProteomicsProto-Oncogene ProteinsAcute-Phase ProteinsAntibodies, ImmobilizedBlood ProteinsCCL16 protein, humanChemokines, CCLCN2 protein, humanLipocalin-2LipocalinsProto-Oncogene ProteinsAntibodiesPlasma profilingProtein arraysSuspension bead arraysVerification

Identifiers

PMID24151238
PMCPMC4265267
OpenAlexW2066587129

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.