Evidence map›Paper›PMID 24150946›Full record

ArticleNucleic acids research2014

Staphylococcus aureus protein SAUGI acts as a uracil-DNA glycosylase inhibitor.

Hao-Ching Wang, Kai-Cheng Hsu, Jinn-Moon Yang, Mao-Lun Wu, Tzu-Ping Ko, Shen-Rong Lin, Andrew H-J Wang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 43 citations in OpenAlex.

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  16. Life without dUTPase.Frontiers in microbiology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hao-Ching WangInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan, Graduate Institute of Translational Medicine, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan, Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30050, Taiwan, Center for Bioinformatics Research, National Chiao Tung University, Hsinchu, 30050, Taiwan and Core Facilities for Protein Structural Analysis, Academia Sinica, Taipei 115, Taiwan.
Kai-Cheng Hsu
Jinn-Moon Yang
Mao-Lun Wu
Tzu-Ping Ko
Shen-Rong Lin
Andrew H-J Wang
National Yang Ming Chiao Tung University · TWInstitute of Biological Chemistry, Academia Sinica · TWTaipei Medical University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA mimic proteins are unique factors that control the DNA binding activity of target proteins by directly occupying their DNA binding sites. The extremely divergent amino acid sequences of the DNA mimics make these proteins hard to predict, and although they are likely to be ubiquitous, to date, only a few have been reported and functionally analyzed. Here we used a bioinformatic approach to look for potential DNA mimic proteins among previously reported protein structures. From ∼14 candidates, we selected the Staphylococcus conserved hypothetical protein SSP0047, and used proteomic and structural approaches to show that it is a novel DNA mimic protein. In Staphylococcus aureus, we found that this protein acts as a uracil-DNA glycosylase inhibitor, and therefore named it S. aureus uracil-DNA glycosylase inhibitor (SAUGI). We also determined and analyzed the complex structure of SAUGI and S. aureus uracil-DNA glycosylase (SAUDG). Subsequent BIAcore studies further showed that SAUGI has a high binding affinity to both S. aureus and human UDG. The two uracil-DNA glycosylase inhibitors (UGI and p56) previously known to science were both found in Bacillus phages, and this is the first report of a bacterial DNA mimic that may regulate SAUDG's functional roles in DNA repair and host defense.

Indexed as

Staphylococcus aureusBacterial ProteinsDNAEnzyme InhibitorsModels, MolecularMolecular MimicryProtein ConformationUracil-DNA GlycosidaseBacterial ProteinsDNAEnzyme InhibitorsUracil-DNA Glycosidase

Identifiers

PMID24150946
PMCPMC3902945
OpenAlexW2133422148

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.