Evidence map›Paper›PMID 24150423›Full record

ArticleMolecular systems biology2013

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence.

Benjamin Péret, Alistair M Middleton, Andrew P French, Antoine Larrieu, Anthony Bishopp, Maria Njo, Darren M Wells, Silvana Porco, Nathan Mellor, Leah R Band and 16 more

Abstract read
In one paragraph

Article in Molecular systems biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Auxin as an architect of the pectin matrix.Journal of experimental botany · 2023
    Review
  8. Article
  9. Auxin in Root Development.Cold Spring Harbor perspectives in biology · 2022
    Review
  10. Modeling Auxin Signaling in Roots: Auxin Computations.Cold Spring Harbor perspectives in biology · 2022
    Review
  11. Comparative transcriptome analysis and identification of candidate adaptive evolution genes ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  12. Auxin-Regulated Lateral Root Organogenesis.Cold Spring Harbor perspectives in biology · 2021
    Review
  13. TheQuantitative plant biology · 2021
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Interplay of Auxin and Cytokinin in Lateral Root Development.International journal of molecular sciences · 2019
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors.

Benjamin Péret1] Centre for Plant Integrative Biology, University of Nottingham, Loughborough, UK [2] Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough, UK [3] Unité Mixte de Recherche 7265, Commissariat à l'Energie Atomique et aux Energies Alternatives, Centre National de la Recherche Scientifique, Aix-Marseille Université, Laboratoire de Biologie du Développement des Plantes, Saint-Paul-lez-Durance, France.
Alistair M Middleton
Andrew P French
Antoine Larrieu
Anthony Bishopp
Maria Njo
Darren M Wells
Silvana Porco
Nathan Mellor
Leah R Band
Ilda Casimiro
Jürgen Kleine-Vehn
Steffen Vanneste
Ilkka Sairanen
Romain Mallet
Göran Sandberg
Karin Ljung
Tom Beeckman
Eva Benkova
Jiří Friml
Eric Kramer
John R King
Ive De Smet
Tony Pridmore
Markus Owen
Malcolm J Bennett

Funding

Biotechnology and Biological Sciences Research Council BB/G023972/1Biotechnology and Biological Sciences Research Council BB/H022457/1
6 · The paper itself

Abstract

In Arabidopsis, lateral roots originate from pericycle cells deep within the primary root. New lateral root primordia (LRP) have to emerge through several overlaying tissues. Here, we report that auxin produced in new LRP is transported towards the outer tissues where it triggers cell separation by inducing both the auxin influx carrier LAX3 and cell-wall enzymes. LAX3 is expressed in just two cell files overlaying new LRP. To understand how this striking pattern of LAX3 expression is regulated, we developed a mathematical model that captures the network regulating its expression and auxin transport within realistic three-dimensional cell and tissue geometries. Our model revealed that, for the LAX3 spatial expression to be robust to natural variations in root tissue geometry, an efflux carrier is required--later identified to be PIN3. To prevent LAX3 from being transiently expressed in multiple cell files, PIN3 and LAX3 must be induced consecutively, which we later demonstrated to be the case. Our study exemplifies how mathematical models can be used to direct experiments to elucidate complex developmental processes.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsBiological TransportCell WallGene Expression ProfilingGene Expression Regulation, DevelopmentalIndoleacetic AcidsMembrane Transport ProteinsModels, GeneticOrgan SpecificityPlant RootsSignal TransductionArabidopsis ProteinsIndoleacetic AcidsLAX3 protein, ArabidopsisMembrane Transport ProteinsPIN3 protein, Arabidopsis

Identifiers

PMID24150423
PMCPMC3817398

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.