Evidence map›Paper›PMID 24149845›Full record

ArticleRNA (New York, N.Y.)2013

Overlapping and distinct functions of CstF64 and CstF64τ in mammalian mRNA 3' processing.

Chengguo Yao, Eun-A Choi, Lingjie Weng, Xiaohui Xie, Ji Wan, Yi Xing, James J Moresco, Patricia G Tu, John R Yates, Yongsheng Shi

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. The Role of mRNA Alternative Processing in Mammalian Neurodevelopment.International journal of molecular sciences · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. CSTF2 mediated mRNA NNature communications · 2023
    Article
  7. Article
  8. Nuclear mEMBO reports · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Emerging Roles for 3' UTRs in Neurons.International journal of molecular sciences · 2020
    Review
  16. Review
  17. Mechanistic insights into mRNA 3'-end processing.Current opinion in structural biology · 2019
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Chengguo Yao
Eun-A Choi
Lingjie Weng
Xiaohui Xie
Ji Wan
Yi Xing
James J Moresco
Patricia G Tu
John R Yates
Yongsheng Shi
University of California, Irvine · USScripps Research Institute · USUniversity of Iowa · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Characterization of the mammalian mRNA-3'-end processing complexR01GM090056 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHI, YONGSHENG · 2010 to 2022
$4.2M
VARIATION AND REGULATION OF ALTERNATIVE SPLICING IN HUMAN TRANSCRIPTOMESR01GM088342 · NIGMS · UNIVERSITY OF IOWA · PI XING, YI · 2010 to 2020
$2.9M
Genetic Regulation of the Response to Dietary RestrictionR01AG027463 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 2008 to 2012
$2.4M
Machine learning methods to increase genomic accessibility by next-gen sequencingR01HG006870 · NHGRI · UNIVERSITY OF CALIFORNIA-IRVINE · PI XIE, XIAOHUI · 2012 to 2014
$662k
HSRD VA CDP 12-186NCRR NIH HHS 5P41RR011823-17NCRR NIH HHS P41 RR011823NHGRI NIH HHS R01 HG006870NIA NIH HHS R01 AG027463NIA NIH HHS R01AG027463-04NIGMS NIH HHS 8 P41 GM103533-17NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM088342NIGMS NIH HHS R01GM088342NIGMS NIH HHS R01 GM090056NIGMS NIH HHS R01GM090056
6 · The paper itself

Abstract

mRNA 3' processing is dynamically regulated spatially and temporally. However, the underlying mechanisms remain poorly understood. CstF64τ is a paralog of the general mRNA 3' processing factor, CstF64, and has been implicated in mediating testis-specific mRNA alternative polyadenylation (APA). However, the functions of CstF64τ in mRNA 3' processing have not been systematically investigated. We carried out a comprehensive characterization of CstF64τ and compared its properties to those of CstF64. In contrast to previous reports, we found that both CstF64 and CstF64τ are widely expressed in mammalian tissues, and their protein levels display tissue-specific variations. We further demonstrated that CstF64 and CstF64τ have highly similar RNA-binding specificities both in vitro and in vivo. CstF64 and CstF64τ modulate one another's expression and play overlapping as well as distinct roles in regulating global APA profiles. Interestingly, protein interactome analyses revealed key differences between CstF64 and CstF64τ, including their interactions with another mRNA 3' processing factor, symplekin. Together, our study of CstF64 and CstF64τ revealed both functional overlap and specificity of these two important mRNA 3' processing factors and provided new insights into the regulatory mechanisms of mRNA 3' processing.

Indexed as

PolyadenylationAnimalsCleavage Stimulation FactorConsensus SequenceGene ExpressionGene Expression ProfilingHeLa CellsHumansMiceMice, Inbred C57BLNIH 3T3 CellsNuclear ProteinsOrgan SpecificityProtein BindingProtein Interaction Domains and MotifsProtein Interaction MappingCleavage Stimulation FactorCSTF2T protein, humanNuclear ProteinsRNA-Binding ProteinsRNA, MessengerSYMPK protein, human3′ end formationalternative polyadenylationmRNA processingsequencing

Identifiers

PMID24149845
PMCPMC3884657
OpenAlexW2047935781

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.