Evidence map›Paper›PMID 24149651›Full record

ArticleHeredity2014

Replicated high-density genetic maps of two great tit populations reveal fine-scale genomic departures from sex-equal recombination rates.

K van Oers, A W Santure, I De Cauwer, N E M van Bers, R P M A Crooijmans, B C Sheldon, M E Visser, J Slate, M A M Groenen

Abstract read
In one paragraph

Article in Heredity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

K van OersDepartment of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
A W SantureDepartment of Animal and Plant Sciences, University of Sheffield, Sheffield, UK.
I De Cauwer1] Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK [2] Laboratoire de Génétique et Evolution des Populations Végétales, UMR CNRS 8198, Bâtiment SN2, Université des Sciences et Technologies de Lille - Lille 1, Villeneuve d'Ascq Cedex, France.
N E M van Bers1] Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands [2] Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, Wageningen, The Netherlands.
R P M A CrooijmansAnimal Breeding and Genomics Centre, Wageningen University, De Elst 1, Wageningen, The Netherlands.
B C SheldonEdward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK.
M E VisserDepartment of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
J SlateDepartment of Animal and Plant Sciences, University of Sheffield, Sheffield, UK.
M A M GroenenAnimal Breeding and Genomics Centre, Wageningen University, De Elst 1, Wageningen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Linking variation in quantitative traits to variation in the genome is an important, but challenging task in the study of life-history evolution. Linkage maps provide a valuable tool for the unravelling of such trait-gene associations. Moreover, they give insight into recombination landscapes and between-species karyotype evolution. Here we used genotype data, generated from a 10k single-nucleotide polymorphism (SNP) chip, of over 2000 individuals to produce high-density linkage maps of the great tit (Parus major), a passerine bird that serves as a model species for ecological and evolutionary questions. We created independent maps from two distinct populations: a captive F2-cross from The Netherlands (NL) and a wild population from the United Kingdom (UK). The two maps contained 6554 SNPs in 32 linkage groups, spanning 2010 cM and 1917 cM for the NL and UK populations, respectively, and were similar in size and marker order. Subtle levels of heterochiasmy within and between chromosomes were remarkably consistent between the populations, suggesting that the local departures from sex-equal recombination rates have evolved. This key and surprising result would have been impossible to detect if only one population was mapped. A comparison with zebra finch Taeniopygia guttata, chicken Gallus gallus and the green anole lizard Anolis carolinensis genomes provided further insight into the evolution of avian karyotypes.

Indexed as

Genetics, PopulationPolymorphism, Single NucleotideRecombination, GeneticAnimalsChickensChromosome MappingFemaleFinchesGenetic LinkageGenomeLizardsMaleNetherlandsPasseriformesUnited Kingdom

Identifiers

PMID24149651
PMCPMC3931172

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.