Evidence map›Paper›PMID 24148319›Full record

ArticleBMC genomics2013

Comparative analysis of resistant and susceptible macrophage gene expression response to Leishmania major parasite.

Imen Rabhi, Sameh Rabhi, Rym Ben-Othman, Mohamed Radhouane Aniba, Sysco Consortium, Bernadette Trentin, David Piquemal, Béatrice Regnault, Lamia Guizani-Tabbane

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  6. Identification of the Host Substratome ofFrontiers in cell and developmental biology · 2021
    Article
  7. Advances in UnderstandingFrontiers in cell and developmental biology · 2021
    Review
  8. Model-based Evaluation of Gene Expression Changes in Response toGene regulation and systems biology · 2019
    Review
  9. Article
  10. Review
  11. Article
  12. Article
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  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Imen Rabhi
Sameh Rabhi
Rym Ben-Othman
Mohamed Radhouane Aniba
Sysco Consortium
Bernadette Trentin
David Piquemal
Béatrice Regnault
Lamia Guizani-TabbaneInstitut Pasteur de Tunis, Parasitologies medicales biotechnologies et Biomolecules, 13, Place Pasteur - B, P, 74,, 1002 Tunis-Belvedere, Tunisia. lamia.guizani@Pasteur.rns.tn.
Institut Pasteur de Tunis · TNEuromedic · PLInstitut Pasteur · FRUniversity of Maryland, College Park · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLeishmania are obligated intracellular pathogens that replicate almost exclusively in macrophages. The outcome of infection depends largely on parasite pathogenicity and virulence but also on the activation status and genetic background of macrophages. Animal models are essential for a better understanding of pathogenesis of different microbes including Leishmania.

resultsHere we compared the transcriptional signatures of resistant (C57BL/6) and susceptible (BALB/c) mouse bone marrow-derived macrophages in response to Leishmania major (L. major) promastigotes infection.Microarray results were first analyzed for significant pathways using the Kyoto Encylopedia of Genes and Genomes (KEGG) database. The analysis revealed that a large set of the shared genes is involved in the immune response and that difference in the expression level of some chemokines and chemokine receptors could partially explain differences in resistance. We next focused on up-regulated genes unique to either BALB/c or C57BL/6 derived macrophages and identified, using KEGG database, signal transduction pathways among the most relevant pathways unique to both susceptible and resistant derived macrophages. Indeed, genes unique to C57BL/6 BMdMs were associated with target of rapamycin (mTOR) signaling pathway while a range of genes unique to BALB/c BMdMs, belong to p53 signaling pathway. We next investigated whether, in a given mice strain derived macrophages, the different up-regulated unique genes could be coordinately regulated. Using GeneMapp Cytoscape, we showed that the induced genes unique to BALB/c or C57BL/6 BMdMs are interconnected. Finally, we examined whether the induced pathways unique to BALB/c derived macrophages interfere with the ones unique to C57BL/6 derived macrophages. Protein-protein interaction analysis using String database highlights the existence of a cross-talk between p53 and mTOR signaling pathways respectively specific to susceptible and resistant BMdMs.

conclusionsTaken together our results suggest that strains specific pathogenesis may be due to a difference in the magnitude of the same pathways and/or to differentially expressed pathways in the two mouse strains derived macrophages. We identify signal transduction pathways among the most relevant pathways modulated by L. major infection, unique to BALB/c and C57BL/6 BMdM and postulate that the interplay between these potentially interconnected pathways could direct the macrophage response toward a given phenotype.

Indexed as

AnimalsBone Marrow CellsDatabases, GeneticLeishmania majorMacrophagesMiceMice, Inbred BALB CMice, Inbred C57BLOligonucleotide Array Sequence AnalysisProtein Interaction MapsSignal TransductionTOR Serine-Threonine KinasesTumor Suppressor Protein p53TOR Serine-Threonine KinasesTumor Suppressor Protein p53

Identifiers

PMID24148319
PMCPMC4007596
OpenAlexW2138267209

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.