Evidence map›Paper›PMID 24147788›Full record

ArticleThe Plant journal : for cell and molecular biology2014

A multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis.

Mathilde Laetitia Audrey Simon, Matthieu Pierre Platre, Sonia Assil, Ringo van Wijk, William Yawei Chen, Joanne Chory, Marlène Dreux, Teun Munnik, Yvon Jaillais

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed.

  1. Article
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  14. Review
  15. Article
  16. Imaging Plant Lipids with Fluorescent Reporters.Plants (Basel, Switzerland) · 2024
    Review
  17. Exploring lipid-protein interactions in plant membranes.Journal of experimental botany · 2024
    Review
  18. Article
  19. Article
  20. Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mathilde Laetitia Audrey SimonCentre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, 46 Allée d'Italie, 69364, Lyon Cedex 07, France.
Matthieu Pierre Platre
Sonia Assil
Ringo van Wijk
William Yawei Chen
Joanne Chory
Marlène Dreux
Teun Munnik
Yvon Jaillais

Funding

Molecular Mechanisms of Steroid Hormone Perception at the Cell SurfaceR01GM094428 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI CHORY, JOANNE · 2011 to 2014
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS GM094428NIGMS NIH HHS R01 GM094428
6 · The paper itself

Abstract

Phosphatidylinositolphosphates (PIPs) are phospholipids that contain a phosphorylated inositol head group. PIPs represent a minor fraction of total phospholipids, but are involved in many regulatory processes, such as cell signalling and intracellular trafficking. Membrane compartments are enriched or depleted in specific PIPs, providing a unique composition for these compartments and contributing to their identity. The precise subcellular localization and dynamics of most PIP species is not fully understood in plants. Here, we designed genetically encoded biosensors with distinct relative affinities and expressed them stably in Arabidopsis thaliana. Analysis of this multi-affinity 'PIPline' marker set revealed previously unrecognized localization of various PIPs in root epidermis. Notably, we found that PI(4,5)P2 is able to localize PIP2 -interacting protein domains to the plasma membrane in non-stressed root epidermal cells. Our analysis further revealed that there is a gradient of PI4P, with the highest concentration at the plasma membrane, intermediate concentration in post-Golgi/endosomal compartments, and the lowest concentration in the Golgi. Finally, we also found a similar gradient of PI3P from high in late endosomes to low in the tonoplast. Our library extends the range of available PIP biosensors, and will allow rapid progress in our understanding of PIP dynamics in plants.

Indexed as

ArabidopsisBiomarkersBiosensing TechniquesCell CompartmentationPhosphatidylinositolsBiomarkersPhosphatidylinositolsArabidopsis thalianaendosomelipid binding domainlipid signallingmembrane traffickingphosphoinositidesensortechnical advance

Identifiers

PMID24147788
PMCPMC3981938

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.