Evidence map›Paper›PMID 24147109›Full record

ArticlePloS one2013

Fecal protease activity is associated with compositional alterations in the intestinal microbiota.

Ian M Carroll, Tamar Ringel-Kulka, Laurent Ferrier, Michael C Wu, Jennica P Siddle, Lionel Bueno, Yehuda Ringel

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 70 citations in OpenAlex.

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  12. [Functional Gastrointestinal Disorders in Patients with Inflammatory Bowel Disease].The Korean journal of gastroenterology = Taehan Sohwagi Hakhoe chi · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ian M CarrollDivision of Gastroenterology and Hepatology, Department of Medicine, the University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.
Tamar Ringel-Kulka
Laurent Ferrier
Michael C Wu
Jennica P Siddle
Lionel Bueno
Yehuda Ringel
University of North Carolina at Chapel Hill · USInstitut National de la Recherche Agronomique · MA

Funding

PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Ryan B Sartor · 1985 to 2026
$30.5M
The Role of Intestinal Inflammation in the Pathophysiology of IBSK23DK075621 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RINGEL, YEHUDA · 2006 to 2010
$786k
Inflammatory Effect of Enteric Bacterial-Mediated Intestinal PermeabilityK01DK092330 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CARROLL, IAN MICHAEL · 2011 to 2015
$597k
Fecal Microflora in Irritable Bowel Syndrome (IBS): Characterization and SignificR03DK084294 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RINGEL, YEHUDA · 2010 to 2011
$147k
NIDDK NIH HHS DK075621NIDDK NIH HHS DK084294NIDDK NIH HHS DK092330NIDDK NIH HHS K01 DK092330NIDDK NIH HHS K23 DK075621NIDDK NIH HHS P30 DK034987NIDDK NIH HHS R03 DK084294
6 · The paper itself

Abstract

objectiveIntestinal proteases carry out a variety of functions in the gastrointestinal (GI) tract. Studies have reported that elevated enteric proteases in patients with GI disease can alter intestinal physiology, however the origin (human vs. microbial) of elevated proteases in patients with GI disease is unclear.

aimThe aim of this study was to investigate the association between protease activity and the microbiota in human fecal samples.

designIn order to capture a wide range of fecal protease (FP) activity stool samples were collected from 30 IBS patients and 24 healthy controls. The intestinal microbiota was characterized using 454 high throughput pyro-sequencing of the 16S rRNA gene. The composition and diversity of microbial communities were determined and compared using the Quantitative Insights Into Microbial Ecology (QIIME) pipeline. FP activity levels were determined using an ELISA-based method. FP activity was ranked and top and bottom quartiles (n=13 per quartile) were identified as having high and low FP activity, respectively.

resultsThe overall diversity of the intestinal microbiota displayed significant clustering separation (p = 0.001) between samples with high vs. low FP activity. The Lactobacillales, Lachnospiraceae, and Streptococcaceae groups were positively associated with FP activity across the entire study population, whilst the Ruminococcaceae family and an unclassified Coriobacteriales family were negatively associated with FP activity.

conclusionsThese data demonstrate significant associations between specific intestinal bacterial groups and fecal protease activity and provide a basis for further causative studies investigating the role of enteric microbes and GI diseases.

Indexed as

AdultDNA, BacterialFecesFemaleHumansIntestinesLactobacillalesMalePeptide HydrolasesRNA, Ribosomal, 16SStreptococcaceaeDNA, BacterialPeptide HydrolasesRNA, Ribosomal, 16S

Identifiers

PMID24147109
PMCPMC3798377
OpenAlexW2061301384

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.