Evidence map›Paper›PMID 24146994›Full record

ArticlePloS one2013

Identification and characterization of a novel trehalose synthase gene derived from saline-alkali soil metagenomes.

Ling Jiang, Ming Lin, Yang Zhang, Yanping Li, Xian Xu, Shuang Li, He Huang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 48 citations in OpenAlex.

  1. Structural and Mutational Analyses of Trehalose Synthase fromJournal of agricultural and food chemistry · 2024
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  6. Review
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  11. Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015
    Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ling JiangCollege of Food Science and Light Industry, Nanjing University of Technology, Nanjing, People's Republic of China.
Ming Lin
Yang Zhang
Yanping Li
Xian Xu
Shuang Li
He Huang
Nanjing Tech University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel trehalose synthase (TreS) gene was identified from a metagenomic library of saline-alkali soil by a simple activity-based screening system. Sequence analysis revealed that TreS encodes a protein of 552 amino acids, with a deduced molecular weight of 63.3 kDa. After being overexpressed in Escherichia coli and purified, the enzymatic properties of TreS were investigated. The recombinant TreS displayed its optimal activity at pH 9.0 and 45 °C, and the addition of most common metal ions (1 or 30 mM) had no inhibition effect on the enzymatic activity evidently, except for the divalent metal ions Zn(2+) and Hg(2+). Kinetic analysis showed that the recombinant TreS had a 4.1-fold higher catalytic efficiency (Kcat/K m ) for maltose than for trehalose. The maximum conversion rate of maltose into trehalose by the TreS was reached more than 78% at a relatively high maltose concentration (30%), making it a good candidate in the large-scale production of trehalsoe after further study. In addition, five amino acid residues, His172, Asp201, Glu251, His318 and Asp319, were shown to be conserved in the TreS, which were also important for glycosyl hydrolase family 13 enzyme catalysis.

Indexed as

MetagenomeSoil MicrobiologyAmino Acid SequenceBacterial ProteinsEnzyme ActivationGene ExpressionGene LibraryGlucosyltransferasesHydrogen-Ion ConcentrationIonsKineticsMetalsModels, MolecularMolecular Sequence DataMutationPhylogenyBacterial ProteinsGlucosyltransferasesIonsMetalsRecombinant ProteinsSoiltrehalose synthase

Identifiers

PMID24146994
PMCPMC3797794
OpenAlexW1965333241

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.