Evidence map›Paper›PMID 24146023›Full record

ReviewPlanta2014

A systems biology perspective on the role of WRKY transcription factors in drought responses in plants.

Prateek Tripathi, Roel C Rabara, Paul J Rushton

Open access · bronzeAbstract readReview
PubMed Publisher
In one paragraph

Review in Planta, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 1 synthesis or guideline pooled it, 253 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Physiological, Photosynthetic Characteristic and Transcriptome Analysis ofInternational journal of molecular sciences · 2024
    Article
  9. Phytohormones and related genes function as physiological and molecular switches regulating water stress response in the sunflower.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. PoWRKY71 is involved inHorticulture research · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. The Transcription FactorsInternational journal of molecular sciences · 2023
    Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Prateek TripathiMolecular and Computational Biology, Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, TRF 108, 3430 S Vermont Ave, Los Angeles, CA, 90089, USA, tprateek@usc.edu.
Roel C Rabara
Paul J Rushton
University of Southern California · USResearch Institute of Dallas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought is one of the major challenges affecting crop productivity and yield. However, water stress responses are notoriously multigenic and quantitative with strong environmental effects on phenotypes. It is also clear that water stress often does not occur alone under field conditions but rather in conjunction with other abiotic stresses such as high temperature and high light intensities. A multidisciplinary approach with successful integration of a whole range of -omics technologies will not only define the system, but also provide new gene targets for both transgenic approaches and marker-assisted selection. Transcription factors are major players in water stress signaling and some constitute major hubs in the signaling webs. The main transcription factors in this network include MYB, bHLH, bZIP, ERF, NAC, and WRKY transcription factors. The role of WRKY transcription factors in abiotic stress signaling networks is just becoming apparent and systems biology approaches are starting to define their places in the signaling network. Using systems biology approaches, there are now many transcriptomic analyses and promoter analyses that concern WRKY transcription factors. In addition, reports on nuclear proteomics have identified WRKY proteins that are up-regulated at the protein level by water stress. Interactomics has started to identify different classes of WRKY-interacting proteins. What are often lacking are connections between metabolomics, WRKY transcription factors, promoters, biosynthetic pathways, fluxes and downstream responses. As more levels of the system are characterized, a more detailed understanding of the roles of WRKY transcription factors in drought responses in crops will be obtained.

Indexed as

Gene Expression Regulation, PlantGenomicsMetabolomicsSystems BiologyCrops, AgriculturalDroughtsModels, BiologicalPhylogenyPlant ProteinsPlantsProtein Structure, TertiarySignal TransductionStress, PhysiologicalTranscription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID24146023
OpenAlexW1996146049

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.