Evidence map›Paper›PMID 24145278›Full record

ArticleScientific reports2013

Adhesion and fusion efficiencies of human immunodeficiency virus type 1 (HIV-1) surface proteins.

Terrence M Dobrowsky, S Alireza Rabi, Rebecca Nedellec, Brian R Daniels, James I Mullins, Donald E Mosier, Robert F Siliciano, Denis Wirtz

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Terrence M Dobrowsky1] Department of Chemical and Biomolecular Engineering, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, USA [2].
S Alireza Rabi
Rebecca Nedellec
Brian R Daniels
James I Mullins
Donald E Mosier
Robert F Siliciano
Denis Wirtz
Johns Hopkins University · USScripps Research Institute · USHoward Hughes Medical Institute · USUniversity of Washington · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI EDWIN ROBERTO ORELLANA · 1988 to 2026
$104.9M
Viral Determinants of HIV-1 Transmission in African HeterosexualsP01AI057005 · NIAID · UNIVERSITY OF WASHINGTON · PI LINGAPPA, JAIRAM RAO · 2003 to 2014
$20.5M
TRANS NETWORK PROJECTSU54CA143868 · NCI · JOHNS HOPKINS UNIVERSITY · PI SEARSON, PETER C · 2009 to 2013
$13.7M
CELLULAR &MOLECULAR MECH OF INFLAMMATORY REACTIONST32AI007247 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Joel L Pomerantz · 1985 to 2026
$10.2M
Occurrence and Outcome of Dual HIV-1 InfectionR37AI047734 · NIAID · UNIVERSITY OF WASHINGTON · PI MULLINS, JAMES IVAN · 2005 to 2014
$5.9M
HIV CORECEPTOR SWITCHINGR01AI052778 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MOSIER, DONALD E · 2003 to 2010
$3.8M
NOVEL PARADIGMS FOR DRUG DISCOVERY: COMPUTATIONAL MULTITARGET SCREENINGDP1LM011509 · NLM · UNIVERSITY OF WASHINGTON · PI SAMUDRALA, RAM · 2012 to 2014
$2.4M
OCCURRENCE AND OUTCOME OF DUAL HIV-1 INFECTIONR01AI047734 · NIAID · UNIVERSITY OF WASHINGTON · PI MULLINS, JAMES IVAN · 2000 to 2004
$2.4M
The Role of LIM Proteins in Cell Migration and AdhesionR01CA085839 · NCI · WASHINGTON UNIVERSITY · PI LONGMORE, GREGORY D. · 2000 to 2009
$2.2M
The nucleus-cytoskeleton connection in health and diseaseR01GM084204 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI HODZIC, DIDIER, WIRTZ, DENIS · 2008 to 2011
$1.5M
HIV Coreceptor SwitchingR56AI052778 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MOSIER, DONALD E · 2011 to 2011
$474k
Howard Hughes Medical InstituteNCI NIH HHS CA143868NCI NIH HHS CA85839NCI NIH HHS R01 CA085839NCI NIH HHS U54 CA143868NIAID NIH HHS AI 27757NIAID NIH HHS AI47734NIAID NIH HHS AI52778NIAID NIH HHS P01 AI057005NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI047734NIAID NIH HHS R01 AI052778NIAID NIH HHS R37 AI047734NIAID NIH HHS R56 AI052778NIAID NIH HHS T32 AI007247NIGMS NIH HHS GM084204NIGMS NIH HHS R01 GM084204
6 · The paper itself

Abstract

In about half of patients infected with HIV-1 subtype B, viral populations shift from utilizing the transmembrane protein CCR5 to CXCR4, as well as or instead of CCR5, during late stage progression of the disease. How the relative adhesion efficiency and fusion competency of the viral Env proteins relate to infection during this transition is not well understood. Using a virus-cell fusion assay and live-cell single-molecule force spectroscopy, we compare the entry competency of viral clones to tensile strengths of the individual Env-receptor bonds of Env proteins obtained from a HIV-1 infected patient prior to and during coreceptor switching. The results suggest that the genetic determinants of viral entry were predominantly enriched in the C3, HR1 and CD regions rather than V3. Env proteins can better mediate entry into cells after coreceptor switch; this effective entry capacity does not correlate with the bond strengths between viral Env and cellular receptors.

Indexed as

Virus AttachmentVirus InternalizationCD4 AntigensCell Lineenv Gene Products, Human Immunodeficiency VirusHIV-1HumansProtein BindingProtein Interaction Domains and MotifsReceptors, CCR5Receptors, CXCR4Receptors, HIVCD4 Antigensenv Gene Products, Human Immunodeficiency VirusReceptors, CCR5Receptors, CXCR4Receptors, HIV

Identifiers

PMID24145278
PMCPMC3804852
OpenAlexW1986239118

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.