Evidence map›Paper›PMID 24145036›Full record

ArticleThe Journal of biological chemistry2013

UDP-glucose dehydrogenase activity and optimal downstream cellular function require dynamic reorganization at the dimer-dimer subunit interfaces.

Annastasia S Hyde, Ashley M Thelen, Joseph J Barycki, Melanie A Simpson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Review
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  8. Article
  9. Integration of Sugar Metabolism and Proteoglycan Synthesis by UDP-glucose Dehydrogenase.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2021
    Review
  10. Article
  11. A Missense Mutation in theFrontiers in pediatrics · 2020
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Annastasia S HydeFrom the Department of Biochemistry, University of Nebraska, Lincoln, Nebraska 68588-0664.
Ashley M Thelen
Joseph J Barycki
Melanie A Simpson
University of Nebraska–Lincoln · US

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Nebraska Center for Cellular SignalingP20GM103489 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI JOHNSON, KEITH R · 2012 to 2012
$2.0M
Mechanisms of Hyaluronan Signaling and Turnover in Prostate CancerR01CA165574 · NCI · UNIVERSITY OF NEBRASKA LINCOLN · PI SIMPSON, MELANIE A. · 2012 to 2016
$1.6M
Structural insights into redox homeostasisR01GM077289 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BARYCKI, JOSEPH J · 2006 to 2010
$1.4M
NCI NIH HHS R01 CA165574NIGMS NIH HHS P20 GM103489NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41-GM103311NIGMS NIH HHS R01 GM077289
6 · The paper itself

Abstract

UDP-glucose dehydrogenase (UGDH) provides precursors for steroid elimination, hyaluronan production, and glycosaminoglycan synthesis. The wild-type UGDH enzyme purifies in a hexamer-dimer equilibrium and transiently undergoes dynamic motion that exposes the dimer-dimer interface during catalysis. In the current study we created and characterized point mutations that yielded exclusively dimeric species (obligate dimer, T325D), dimeric species that could be induced to form hexamers in the ternary complex with substrate and cofactor (T325A), and a previously described exclusively hexameric species (UGDHΔ132) to investigate the role of quaternary structure in regulation of the enzyme. Characterization of the purified enzymes revealed a significant decrease in the enzymatic activity of the obligate dimer and hexamer mutants. Kinetic analysis of wild-type UGDH and the inducible hexamer, T325A, showed that upon increasing enzyme concentration, which favors the hexameric species, activity was modestly decreased and exhibited cooperativity. In contrast, cooperative kinetic behavior was not observed in the obligate dimer, T325D. These observations suggest that the regulation of the quaternary assembly of the enzyme is essential for optimal activity and allosteric regulation. Comparison of kinetic and thermal stability parameters revealed structurally dependent properties consistent with a role for controlled assembly and disassembly of the hexamer in the regulation of UGDH. Finally, both T325A and T325D mutants were significantly less efficient in promoting downstream hyaluronan production by HEK293 cells. These data support a model that requires an operational dimer-hexamer equilibrium to function efficiently and preserve regulated activity in the cell.

Indexed as

Amino Acid SubstitutionEnzyme StabilityHEK293 CellsHumansKineticsModels, MolecularMutagenesis, Site-DirectedProtein Interaction Domains and MotifsProtein MultimerizationProtein Structure, QuaternaryProtein SubunitsProteolysisThermodynamicsUridine Diphosphate Glucose DehydrogenaseProtein SubunitsUridine Diphosphate Glucose DehydrogenaseCardiac DefectsDehydrogenaseEnzyme CatalysisGlycobiologyHuman UGDHHyaluronanHyaluronateProstate CancerProtein ConformationProtein Dynamics

Identifiers

PMID24145036
PMCPMC3853257
OpenAlexW2076421632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.