Evidence map›Paper›PMID 24144790›Full record

ArticlePlant physiology2013

Lignification in sugarcane: biochemical characterization, gene discovery, and expression analysis in two genotypes contrasting for lignin content.

Alexandra Bottcher, Igor Cesarino, Adriana Brombini dos Santos, Renato Vicentini, Juliana Lischka Sampaio Mayer, Ruben Vanholme, Kris Morreel, Geert Goeminne, Jullyana Cristina Magalhães Silva Moura, Paula Macedo Nobile and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 121 citations in OpenAlex.

  1. GM crops & food · 2024
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  5. Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  6. Review
  7. Genetic Determinants of Biomass in CFrontiers in plant science · 2022
    Review
  8. Visualization of Suberization and Lignification in Sugarcane.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Article
  10. Article
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  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Alexandra BottcherDepartamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, 13083-970 Campinas, São Paulo, Brazil.
Igor Cesarino
Adriana Brombini dos Santos
Renato Vicentini
Juliana Lischka Sampaio Mayer
Ruben Vanholme
Kris Morreel
Geert Goeminne
Jullyana Cristina Magalhães Silva Moura
Paula Macedo Nobile
Sandra Maria Carmello-Guerreiro
Ivan Antonio dos Anjos
Silvana Creste
Wout Boerjan
Marcos Guimarães de Andrade Landell
Paulo Mazzafera
Universidade Estadual de Campinas (UNICAMP) · BRAgronomical Institute of Campinas · BRVlaams Instituut voor Biotechnologie · BEGhent University · BEUniversidade Estadual do Centro-Oeste · BRUniversidade Federal do Triângulo Mineiro · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sugarcane (Saccharum spp.) is currently one of the most efficient crops in the production of first-generation biofuels. However, the bagasse represents an additional abundant lignocellulosic resource that has the potential to increase the ethanol production per plant. To achieve a more efficient conversion of bagasse into ethanol, a better understanding of the main factors affecting biomass recalcitrance is needed. Because several studies have shown a negative effect of lignin on saccharification yield, the characterization of lignin biosynthesis, structure, and deposition in sugarcane is an important goal. Here, we present, to our knowledge, the first systematic study of lignin deposition during sugarcane stem development, using histological, biochemical, and transcriptional data derived from two sugarcane genotypes with contrasting lignin contents. Lignin amount and composition were determined in rind (outer) and pith (inner) tissues throughout stem development. In addition, the phenolic metabolome was analyzed by ultra-high-performance liquid chromatography-mass spectrometry, which allowed the identification of 35 compounds related to the phenylpropanoid pathway and monolignol biosynthesis. Furthermore, the Sugarcane EST Database was extensively surveyed to identify lignin biosynthetic gene homologs, and the expression of all identified genes during stem development was determined by quantitative reverse transcription-polymerase chain reaction. Our data provide, to our knowledge, the first in-depth characterization of lignin biosynthesis in sugarcane and form the baseline for the rational metabolic engineering of sugarcane feedstock for bioenergy purposes.

Indexed as

Gene Expression Regulation, PlantGenetic Association StudiesBayes TheoremBiosynthetic PathwaysGene Expression ProfilingGenes, PlantGenotypeLigninPhenolsPlant StemsPrincipal Component AnalysisSaccharumSolubilityLigninPhenols

Identifiers

PMID24144790
PMCPMC3850185
OpenAlexW2151318129

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.