Evidence map›Paper›PMID 24144619›Full record

ArticleJournal of molecular biology2014

An iron-sulfur cluster in the polymerase domain of yeast DNA polymerase ε.

Rinku Jain, Eva S Vanamee, Boris G Dzikovski, Angeliki Buku, Robert E Johnson, Louise Prakash, Satya Prakash, Aneel K Aggarwal

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 48 citations in OpenAlex.

  1. Iron Homeostasis and Liver Diseases.Journal of cellular and molecular medicine · 2026
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  17. UvrC Coordinates an OJournal of the American Chemical Society · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Rinku JainDepartment of Structural and Chemical Biology, Mount Sinai School of Medicine, Box 1677, 1425 Madison Avenue, New York, NY 10029, USA.
Eva S VanameeDepartment of Structural and Chemical Biology, Mount Sinai School of Medicine, Box 1677, 1425 Madison Avenue, New York, NY 10029, USA.
Boris G DzikovskiDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Angeliki BukuDepartment of Structural and Chemical Biology, Mount Sinai School of Medicine, Box 1677, 1425 Madison Avenue, New York, NY 10029, USA.
Robert E JohnsonDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX 77755-1061, USA.
Louise PrakashDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX 77755-1061, USA.
Satya PrakashDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX 77755-1061, USA.
Aneel K AggarwalDepartment of Structural and Chemical Biology, Mount Sinai School of Medicine, Box 1677, 1425 Madison Avenue, New York, NY 10029, USA. Electronic address: Aneel.Aggarwal@mssm.edu.
Icahn School of Medicine at Mount Sinai · USThe University of Texas Medical Branch at Galveston · USCornell University · US

Funding

X-BAND PULSE ESR SPECTROMETER FOR STUDY OF LOW-TEMPERATURE IMPURITY-HELIUM P41RR016292 · NCRR · CORNELL UNIVERSITY ITHACA · PI GEORGIEVA, ELKA R · 2001 to 2011
$14.3M
TR&D 4 for ACERT, 2017-2021 funding periodP41GM103521 · NIGMS · CORNELL UNIVERSITY · PI FREED, JACK H · 2012 to 2021
$11.7M
ELECTRON SPIN RELAXATION IN MODEL MEMBRANESR01EB003150 · NIBIB · CORNELL UNIVERSITY ITHACA · PI FREED, JACK H · 2005 to 2016
$4.9M
Translesion synthesis by yeast DNA polymerasesR01CA107650 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PRAKASH, LOUISE · 2004 to 2013
$3.9M
Structural bases of high fidelity of DNA polymerase deltaR01CA138546 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AGGARWAL, ANEEL K. · 2009 to 2013
$2.1M
NCI NIH HHS CA107650NCI NIH HHS CA138546NCI NIH HHS R01 CA107650NCI NIH HHS R01 CA138546NCRR NIH HHS P41 RR016292NIBIB NIH HHS R01 EB003150NIGMS NIH HHS P41 GM103521NIGMS NIH HHS P41GM103521
6 · The paper itself

Abstract

DNA polymerase ε (Polε) is a multi-subunit polymerase that contributes to genomic stability via its roles in leading strand replication and the repair of damaged DNA. Polε from Saccharomyces cerevisiae is composed of four subunits--Pol2, Dpb2, Dpb3, and Dpb4. Here, we report the presence of a [Fe-S] cluster directly within the active polymerase domain of Pol2 (residues 1-1187). We show that binding of the [Fe-S] cluster is mediated by cysteines in an insertion (Pol2(ins)) that is conserved in Pol2 orthologs but is absent in the polymerase domains of Polα, Polδ, and Polζ. We also show that the [Fe-S] cluster is required for Pol2 polymerase activity but not for its exonuclease activity. Collectively, our work suggests that Polε is perhaps more sensitive than other DNA polymerases to changes in oxidative stress in eukaryotic cells.

Indexed as

DNA Polymerase IIIronIron-Sulfur ProteinsOxidative StressSaccharomyces cerevisiaeSulfurDNA Polymerase IIIronIron-Sulfur ProteinsSulfurDNA polymeraseDNA repairDNA replicationEXAFSextended X-ray absorption fine structureFe-S clusterFourier transform EXAFSFT-EXAFSICPinductively coupled plasmaoxidative stress

Identifiers

PMID24144619
PMCPMC4061903
OpenAlexW2036025060

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.