Evidence map›Paper›PMID 24144283›Full record

ArticleJournal of medicinal chemistry2013

Structure-guided design of potent diazobenzene inhibitors for the BET bromodomains.

Guangtao Zhang, Alexander N Plotnikov, Elena Rusinova, Tong Shen, Keita Morohashi, Jennifer Joshua, Lei Zeng, Shiraz Mujtaba, Michael Ohlmeyer, Ming-Ming Zhou

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 126 citations in OpenAlex.

  1. Review
  2. Review
  3. Targeting lysine acetylation readers and writers.Nature reviews. Drug discovery · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Bromodomain inhibitors and therapeutic applications.Current opinion in chemical biology · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Discovery of potent BET bromodomain 1 stereoselective inhibitors using DNA-encoded chemical library selections.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Guangtao ZhangDepartment of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai , 1425 Madison Avenue, New York, New York 10029, United States.
Alexander N Plotnikov
Elena Rusinova
Tong Shen
Keita Morohashi
Jennifer Joshua
Lei Zeng
Shiraz Mujtaba
Michael Ohlmeyer
Ming-Ming Zhou
Icahn School of Medicine at Mount Sinai · US

Funding

Chemical Genomics Paradigm for Epigentic RegulationR01HG004508 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ZHOU, MING-MING · 2008 to 2014
$6.7M
Small Molecule Libraries Targeted to CBP and Attenuation AfosB ExpressionR33DA029963 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI OHLMEYER, MICHAEL, ZHOU, MING-MING · 2012 to 2014
$1.2M
NHGRI NIH HHS R01 HG004508NIDA NIH HHS R33 DA029963
6 · The paper itself

Abstract

BRD4, characterized by two acetyl-lysine binding bromodomains and an extra-terminal (ET) domain, is a key chromatin organizer that directs gene activation in chromatin through transcription factor recruitment, enhancer assembly, and pause release of the RNA polymerase II complex for transcription elongation. BRD4 has been recently validated as a new epigenetic drug target for cancer and inflammation. Our current knowledge of the functional differences of the two bromodomains of BRD4, however, is limited and is hindered by the lack of selective inhibitors. Here, we report our structure-guided development of diazobenzene-based small-molecule inhibitors for the BRD4 bromodomains that have over 90% sequence identity at the acetyl-lysine binding site. Our lead compound, MS436, through a set of water-mediated interactions, exhibits low nanomolar affinity (estimated Ki of 30-50 nM), with preference for the first bromodomain over the second. We demonstrated that MS436 effectively inhibits BRD4 activity in NF-κB-directed production of nitric oxide and proinflammatory cytokine interleukin-6 in murine macrophages. MS436 represents a new class of bromodomain inhibitors and will facilitate further investigation of the biological functions of the two bromodomains of BRD4 in gene expression.

Indexed as

Drug DesignAnimalsBenzeneBromodomain Containing ProteinsCell LineChemical PhenomenaLigandsMiceModels, MolecularNuclear ProteinsProtein Structure, TertiaryStructure-Activity RelationshipSubstrate SpecificityTranscription FactorsBenzeneBrd4 protein, mouseBromodomain Containing ProteinsLigandsNuclear ProteinsTranscription Factors

Identifiers

PMID24144283
PMCPMC3894848
OpenAlexW1968827652

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.