Evidence map›Paper›PMID 24142928›Full record

ArticleG3 (Bethesda, Md.)2013

Regulation of gene expression in Neurospora crassa with a copper responsive promoter.

Teresa M Lamb, Justin Vickery, Deborah Bell-Pedersen

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Circadian clock control of eIF2α phosphorylation is necessary for rhythmic translation initiation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Circadian clock regulation of the glycogen synthase (Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Review
  12. Review
  13. The Promoter Toolbox for Recombinant Gene Expression inFrontiers in bioengineering and biotechnology · 2018
    Review
  14. Article
  15. Article
  16. Accumulation of specific sterol precursors targets a MAP kinase cascade mediating cell-cell recognition and fusion.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Teresa M LambDepartment of Biology, Texas A&M University, College Station, Texas 77843.
Justin Vickery
Deborah Bell-Pedersen
Texas A&M University · US

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
Molecular Genetic Analysis of Fungal Circadian RythmsR01GM058529 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI BELL-PEDERSEN, DEBORAH · 1999 to 2017
$4.6M
Systems Biology of the Circadian Clock Output NetworkR01GM113673 · NIGMS · TEXAS A&M UNIVERSITY · PI BELL-PEDERSEN, DEBORAH, GALAGAN, JAMES E · 2015 to 2018
$1.6M
Determining the Mechanism of Temperature Compensation of the Circadian ClockR01GM106426 · NIGMS · TEXAS A&M UNIVERSITY · PI BELL-PEDERSEN, DEBORAH · 2013 to 2016
$1.1M
NIGMS NIH HHS P01 GM068087NIGMS NIH HHS R01 GM058529NIGMS NIH HHS R01 GM106426NIGMS NIH HHS R01 GM113673
6 · The paper itself

Abstract

Precise control of gene expression is a powerful method to elucidate biological function, and protein overexpression is an important tool for industry and biochemistry. Expression of the Neurospora crassa tcu-1 gene (NCU00830), encoding a high-affinity copper transporter, is tightly controlled by copper availability. Excess copper represses, and copper depletion, via the use of a copper chelator, activates expression. The kinetics of induction and repression of tcu-1 are rapid, and the effects are long lived. We constructed a plasmid carrying the bar gene (for glufosinate selection) fused to the tcu-1 promoter. This plasmid permits the generation of DNA fragments that can direct integration of Ptcu-1 into any desired locus. We use this strategy to integrate Ptcu-1 in front of wc-1, a circadian oscillator and photoreceptor gene. The addition of excess copper to the Ptcu-1::wc-1 strain phenocopies a Δwc-1 strain, and the addition of the copper chelator, bathocuproinedisulfonic acid, phenocopies a wc-1 overexpression strain. To test whether copper repression can recapitulate the loss of viability that an essential gene knockout causes, we placed Ptcu-1 upstream of the essential gene, hpt-1. The addition of excess copper drastically reduced the growth rate as expected. Thus, this strategy will be useful to probe the biological function of any N. crassa gene through controlled expression.

Indexed as

Gene Expression Regulation, FungalPromoter Regions, GeneticCation Transport ProteinsChelating AgentsCopperCopper Transporter 1Gene DeletionGenes, EssentialGenes, FungalGene TargetingKineticsNeurospora crassaPhenanthrolinesPolymerase Chain Reactionbathocuproine sulfonateCation Transport ProteinsChelating AgentsCopperCopper Transporter 1Phenanthrolinesbathocuproinedisulfonic acidcopper sulfate (CuSO4)gene functionprotein overexpressionregulation of essential genes

Identifiers

PMID24142928
PMCPMC3852388
OpenAlexW2020599679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.