Evidence map›Paper›PMID 24141595›Full record

ArticleGenetica2013

Comparative transcriptional analysis reveals differential gene expression between Sand Daffodil tissues.

Bruna De Felice, Francesco Manfellotto, Raffaella D'Alessandro, Olga De Castro, Antonietta Di Maio, Marco Trifuoggi

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Genetica, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Insights on physiological, antioxidant and flowering response to salinity stress of two candidate ornamental species: the native coastal geophytesPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Bruna De FeliceDISTABIF-Department of Science and Technology, Environmental, Biological and Pharmaceutical, University of Naples II, Via Vivaldi 43, 81100, Caserta, Italy, bruna.defelice@unina2.it.
Francesco Manfellotto
Raffaella D'Alessandro
Olga De Castro
Antonietta Di Maio
Marco Trifuoggi
University of Naples Federico II · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sand Daffodil (Pancratium maritimum) is a world-wide endangered Amayllidaceae species and represents an important anti-cancer medicinal resource due to alkaloids production. Despite its increasing pharmaceutical importance, there are not molecular resources that can be utilized toward improving genetic traits. In our research, the suppression subtractive hybridization (SSH) method conducted to generate large-scale expressed sequence tags (EST), was designed to identify gene candidates related to the morphological and physiological differences between the two tissues, leaves and bulbs, since lycorine, the main anti-cancer compound, is there synthesized. We focused on identification of transcripts in different tissues from Sand Daffodil using PCR-based suppression SSH to identify genes involved in global pathway control. Sequencing of 2,000 differentially screened clones from the SSH libraries resulted in 136 unigenes. Functional annotation and gene ontology analysis of up-regulated EST libraries showed several known biosynthetic genes and novel transcripts that may be involved in signaling, cellular transport, or metabolism. Real time RT-PCR analysis of a set of 8 candidate genes further confirmed the differential gene expression.

Indexed as

Expressed Sequence TagsGene ExpressionBase SequenceGene Expression ProfilingGene OntologyGenes, PlantGenome, PlantMolecular Sequence DataNarcissusOrgan SpecificityPhylogenyPlant LeavesPlant RootsReal-Time Polymerase Chain ReactionRetroelementsSequence Analysis, DNARetroelements

Identifiers

PMID24141595
OpenAlexW2166211887

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.