Evidence map›Paper›PMID 24138653›Full record

ArticleBiochemistry2013

X-ray crystal structure of bovine 3 Glu-osteocalcin.

Vladimir N Malashkevich, Steven C Almo, Terry L Dowd

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  13. Article
  14. Osteocalcin-A Versatile Bone-Derived Hormone.Frontiers in endocrinology · 2018
    Review
  15. An overview of osteocalcin progress.Journal of bone and mineral metabolism · 2016
    Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Vladimir N MalashkevichDepartment of Biochemistry, Albert Einstein College of Medicine , Bronx, New York 10461, United States.
Steven C Almo
Terry L Dowd
Albert Einstein College of Medicine · USCity University of New York · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI ALYSON B MOADEL · 1985 to 2026
$111.2M
The NYSGRC: A Large Scale Center for PSI:BiologyU54GM094662 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ALMO, STEVEN C. · 2010 to 2014
$32.6M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structure-Function relation of Connexin disease mutationsR01GM098584 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BARGIELLO, THADDEUS ANDREW, DOWD, TERRY LYNNE · 2012 to 2015
$1.2M
Effect of Pb2+ Toxicity at the Molecular LevelR01ES009032 · NIEHS · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI DOWD, TERRY LYNNE · 2005 to 2009
$1.0M
NOT STATEDR29ES009032 · NIEHS · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI DOWD, TERRY L · 1997 to 2001
$190k
NCI NIH HHS CA013330NCI NIH HHS P30 CA013330NIBIB NIH HHS P30 EB009998NIEHS NIH HHS ES 009032NIEHS NIH HHS R01 ES009032NIEHS NIH HHS R29 ES009032NIGMS NIH HHS GM094662NIGMS NIH HHS R01 GM098584NIGMS NIH HHS U54 GM094662
6 · The paper itself

Abstract

The 3 Glu form of osteocalcin (3 Glu-OCN) is increased in serum during low vitamin K intake or oral anticoagulant use (warfarin). Previous reports using circular dichroism show it is less structured than 3 Gla Ca²⁺-osteocalcin and does not bind strongly to bone mineral. Recent studies have suggested a role for 3 Glu-OCN as a potential regulator of glucose metabolism. A G-protein-coupled receptor, GPRC6a, found in the pancreas and testes was identified as the putative osteocalcin receptor. The purpose of this study is to determine the high-resolution structure of bovine 3 Glu-OCN, using X-ray crystallography, to understand molecular interactions with mineral and the GPRC6a receptor. Diffraction quality crystals of thermally decarboxylated bovine osteocalcin were grown, and the crystal structure was determined to 1.88 Å resolution. The final refined structure contained residues 17-47 and, like 3 Gla Ca²⁺-OCN, consisted of three α-helices surrounding a hydrophobic core, a C23-C29 disulfide bond between two of the helices, and no bound Ca²⁺. Thus, the helical structure of 3 Glu-OCN is Ca²⁺-independent but similar to that of 3 Gla Ca²⁺-OCN. A reduced level of mineral binding could result from a lower number of Ca²⁺ coordinating ligands on 3 Glu-OCN. The structure suggests the GPRC6a receptor may respond to helical osteocalcin and will aid in providing molecular mechanistic insight into the role of 3 Glu-OCN in glucose homeostasis.

Indexed as

AnimalsCattleGlutamic AcidHydrophobic and Hydrophilic InteractionsModels, MolecularOsteocalcinProtein ConformationProtein Interaction Domains and MotifsProtein IsoformsX-Ray DiffractionGlutamic AcidOsteocalcinProtein Isoforms

Identifiers

PMID24138653
PMCPMC4517604
OpenAlexW2058414108

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.