Evidence map›Paper›PMID 24138584›Full record

ArticleBMC microbiology2013

Expression of mucoid induction factor MucE is dependent upon the alternate sigma factor AlgU in Pseudomonas aeruginosa.

Yeshi Yin, F Heath Damron, T Ryan Withers, Christopher L Pritchett, Xin Wang, Michael J Schurr, Hongwei D Yu

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Yeshi Yin
F Heath Damron
T Ryan Withers
Christopher L Pritchett
Xin Wang
Michael J Schurr
Hongwei D YuDepartment of Biochemistry and Microbiology, Joan C, Edwards School of Medicine at Marshall University, Huntington, WV 25755, USA. yuh@marshall.edu.
Marshall University · USInstitute of Plant Protection · CNUniversity of Colorado Anschutz Medical Campus · USUniversity of Colorado Denver · USUniversity of Virginia Health System · USZheJiang Academy of Agricultural Sciences · CN

Funding

WV INBRE: The Inhibitor of Growth Family Member 4 (ING4) inhibits L-Type Amino Acid Transporter 1 (LAT1) expression to suppress Breast CancerP20GM103434 · NIGMS · MARSHALL UNIVERSITY · PI GARY O RANKIN · 2012 to 2026
$61.1M
WVU &MU NEW FACULTY GRANTSP20RR016477 · NCRR · MARSHALL UNIVERSITY · PI RANKIN, GARY O · 2001 to 2011
$35.5M
NCRR NIH HHS NIH P20RR016477NIGMS NIH HHS P20GM103434
6 · The paper itself

Abstract

backgroundAlginate overproduction in P. aeruginosa, also referred to as mucoidy, is a poor prognostic marker for patients with cystic fibrosis (CF). We previously reported the construction of a unique mucoid strain which overexpresses a small envelope protein MucE leading to activation of the protease AlgW. AlgW then degrades the anti-sigma factor MucA thus releasing the alternative sigma factor AlgU/T (σ(22)) to initiate transcription of the alginate biosynthetic operon.

resultsIn the current study, we mapped the mucE transcriptional start site, and determined that P(mucE) activity was dependent on AlgU. Additionally, the presence of triclosan and sodium dodecyl sulfate was shown to cause an increase in P(mucE) activity. It was observed that mucE-mediated mucoidy in CF isolates was dependent on both the size of MucA and the genotype of algU. We also performed shotgun proteomic analysis with cell lysates from the strains PAO1, VE2 (PAO1 with constitutive expression of mucE) and VE2ΔalgU (VE2 with in-frame deletion of algU). As a result, we identified nine algU-dependent and two algU-independent proteins that were affected by overexpression of MucE.

conclusionsOur data indicates there is a positive feedback regulation between MucE and AlgU. Furthermore, it seems likely that MucE may be part of the signal transduction system that senses certain types of cell wall stress to P. aeruginosa.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticAlginatesBacterial ProteinsGlucuronic AcidHexuronic AcidsPeptide HydrolasesPromoter Regions, GeneticPseudomonas aeruginosaSigma FactorTranscription Initiation SiteAlginatesAlgU protein, Pseudomonas aeruginosaBacterial ProteinsGlucuronic AcidHexuronic AcidsPeptide HydrolasesSigma Factor

Identifiers

PMID24138584
PMCPMC3819740
OpenAlexW1990663288

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.