Evidence map›Paper›PMID 24136783›Full record

ArticleJournal of magnetic resonance imaging : JMRI2014

Semiautomatic registration of digital histopathology images to in vivo MR images in molded and unmolded prostates.

Olga Starobinets, Richard Guo, Jeffry P Simko, Kyle Kuchinsky, John Kurhanewicz, Peter R Carroll, Kirsten L Greene, Susan M Noworolski

Abstract readComparative Study
In one paragraph

Article in Journal of magnetic resonance imaging : JMRI, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Olga StarobinetsDepartments of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA.
Richard Guo
Jeffry P Simko
Kyle Kuchinsky
John Kurhanewicz
Peter R Carroll
Kirsten L Greene
Susan M Noworolski
University of California, San Francisco · USGraduate Theological Union · USQB3 · USUniversity of Minnesota Medical Center · US

Funding

Translation and Evaluation of a Multiparametric Prostate Cancer 3T ExamR01CA137207 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HURD, RALPH EUGENE, KURHANEWICZ, JOHN · 2010 to 2014
$2.6M
DCE MRI to Improve Prostate Cancer Identification and CharacterizationR01CA148708 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NOWOROLSKI, SUSAN M · 2010 to 2014
$1.3M
NCI NIH HHS R01 CA137207NCI NIH HHS R01 CA148708
6 · The paper itself

Abstract

purposeTo evaluate a semiautomatic software-based method of registering in vivo prostate MR images to digital histopathology images using two approaches: (i) in which the prostates were molded to simulate distortion due to the endorectal imaging coil before fixation, and (ii) in which the prostates were not molded. MATERIALS AND

methodsT2-weighted MR images and digitized whole-mount histopathology images were acquired for 26 patients with biopsy-confirmed prostate cancer who underwent radical prostatectomy. Ten excised prostates were molded before fixation. A semiautomatic method was used to align MR images to histopathology. Percent overlap between MR and histopathology images, as well as distances between corresponding anatomical landmarks were calculated and used to evaluate the registration technique for molded and unmolded cases.

resultsThe software successfully morphed histology-based prostate images into corresponding MR images. Percent overlap improved from 80.4 ± 5.8% before morphing to 99.7 ± 0.62% post morphing. Molded prostates had a smaller distance between landmarks (1.91 ± 0.75 mm) versus unmolded (2.34 ± 0.68 mm), P < 0.08.

conclusionMolding a prostate before fixation provided a better alignment of internal structures within the prostate, but this did not reach statistical significance. Software-based morphing allowed for nearly complete overlap between the pathology slides and the MR images.

Indexed as

Casts, SurgicalSignal Processing, Computer-AssistedSubtraction TechniqueAlgorithmsHumansImage EnhancementImage Interpretation, Computer-AssistedIn Vitro TechniquesMagnetic Resonance ImagingMaleMiddle AgedPattern Recognition, AutomatedProstatic NeoplasmsReproducibility of ResultsSensitivity and SpecificityhistopathologyMRIprostate cancerregistration

Identifiers

PMID24136783
PMCPMC3984354
OpenAlexW2113118634

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.