Evidence map›Paper›PMID 24136292›Full record

SynthesisNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology2014

Association of gamma-aminobutyric acid A receptor α2 gene (GABRA2) with alcohol use disorder.

Dawei Li, Arvis Sulovari, Chao Cheng, Hongyu Zhao, Henry R Kranzler, Joel Gelernter

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 4 pooled it
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 4 syntheses or guidelines pooled it, 97 citations in OpenAlex.

  1. Pooled it
  2. No association ofFrontiers in neurology · 2022
    Pooled it
  3. Pooled it
  4. Pooled it
  5. Article
  6. Review
  7. Genetic and Epigenetic Approaches to Opioid Use Disorder.Expert reviews in molecular medicine · 2025
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Sex differences in GABAGenes, brain, and behavior · 2022
    Article
  14. FACTORS CONTRIBUTING TO THE ESCALATION OF ALCOHOL CONSUMPTION.Neuroscience and biobehavioral reviews · 2022
    Review
  15. Article
  16. Confirmation of a CausalFrontiers in psychiatry · 2021
    Article
  17. Induced pluripotent stem cell reprogramming-associated methylation at the GABRA2 promoter and chr4p12 GABAAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2020
    Article
  18. Recent advances in genetic studies of alcohol use disorders.Current genetic medicine reports · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Dawei Li1] Department of Psychiatry, School of Medicine, Yale University, New Haven, CT, USA [2] Department of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT, USA [3] Department of Computer Science, University of Vermont, Burlington, VT, USA [4] Neuroscience, Behavior, and Health Initiative, University of Vermont, Burlington, VT, USA.
Arvis SulovariDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT, USA.
Chao ChengDepartment of Genetics, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Hongyu Zhao1] Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA [2] Department of Genetics, School of Medicine, Yale University, New Haven, CT, USA.
Henry R KranzlerDepartment of Psychiatry, Perelman School of Medicine of the University of Pennsylvania and Philadelphia VAMC, Philadelphia, PA, USA.
Joel Gelernter1] Department of Psychiatry, School of Medicine, Yale University, New Haven, CT, USA [2] Department of Genetics, School of Medicine, Yale University, New Haven, CT, USA [3] VA Connecticut Healthcare Center, West Haven, CT, USA.
Yale University · USDartmouth College · USUniversity of Pennsylvania · USUniversity of Vermont · US

Funding

Subject CollectionU10AA008401 · NIAAA · SUNY DOWNSTATE MEDICAL CENTER · PI BERNICE PORJESZ · 1989 to 2026
$162.7M
Translational Technologies CoreP50AA012870 · NIAAA · YALE UNIVERSITY · PI John H. Krystal · 2001 to 2026
$43.7M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
Deep sequencing studies for cannabis and stimulant dependenceR01DA030976 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI EHLERS, CINDY L, GELERNTER, JOEL · 2010 to 2014
$16.5M
Sex-specific analysis of opioid dependence GWAS and beyondR01DA012690 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2000 to 2017
$14.0M
GENETICS OF COCAINE DEPENDENCER01DA012849 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1999 to 2010
$11.5M
Linkage Disequilibrium Studies of Alcohol DependenceR01AA011330 · NIAAA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1997 to 2013
$6.4M
Genomewide Association Study of Cocaine Dependence in two PopulationsRC2DA028909 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2009 to 2010
$4.2M
Genetics of Cocaine DependenceR01DA018432 · NIDA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI KRANZLER, HENRY RICHARD · 2006 to 2010
$3.5M
Genetics of Alcohol Dependence in African-AmericansR01AA017535 · NIAAA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2009 to 2013
$3.0M
FAMILY STUDY OF COCAINE DEPENDENCER01DA013423 · NIDA · WASHINGTON UNIVERSITY · PI BIERUT, LAURA JEAN · 2000 to 2004
$2.2M
Case Control Candidate Gene Study of AddictionR01DA019963 · NIDA · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2007 to 2009
$1.2M
NCI NIH HHS P01 CA089392NCI NIH HHS P01CA089392NHGRI NIH HHS HHSN268200782096CNHGRI NIH HHS U01 HG004422NIAAA NIH HHS AA017535NIAAA NIH HHS AA12870NIAAA NIH HHS P50 AA012870NIAAA NIH HHS R01 AA011330NIAAA NIH HHS R01 AA017535NIAAA NIH HHS U10 AA008401NIDA NIH HHS DA030976NIDA NIH HHS DA12690NIDA NIH HHS DA12849NIDA NIH HHS DA18432NIDA NIH HHS R01 DA012690NIDA NIH HHS R01 DA012849NIDA NIH HHS R01 DA013423NIDA NIH HHS R01 DA018432NIDA NIH HHS R01 DA019963NIDA NIH HHS R01 DA030976NIDA NIH HHS RC2 DA028909NIDA NIH HHS RC2DA028909
6 · The paper itself

Abstract

Gamma-aminobutyric acid (GABA) is a major inhibitory neurotransmitter in mammalian brain. GABA receptor are involved in a number of complex disorders, including substance abuse. No variants of the commonly studied GABA receptor genes that have been associated with substance dependence have been determined to be functional or pathogenic. To reconcile the conflicting associations with substance dependence traits, we performed a meta-analysis of variants in the GABAA receptor genes (GABRB2, GABRA6, GABRA1, and GABRG2 on chromosome 5q and GABRA2 on chromosome 4p12) using genotype data from 4739 cases of alcohol, opioid, or methamphetamine dependence and 4924 controls. Then, we combined the data from candidate gene association studies in the literature with two alcohol dependence (AD) samples, including 1691 cases and 1712 controls from the Study of Addiction: Genetics and Environment (SAGE), and 2644 cases and 494 controls from our own study. Using a Bonferroni-corrected threshold of 0.007, we found strong associations between GABRA2 and AD (P=9 × 10(-6) and odds ratio (OR) 95% confidence interval (CI)=1.27 (1.15, 1.4) for rs567926, P=4 × 10(-5) and OR=1.21 (1.1, 1.32) for rs279858), and between GABRG2 and both dependence on alcohol and dependence on heroin (P=0.0005 and OR=1.22 (1.09, 1.37) for rs211014). Significant association was also observed between GABRA6 rs3219151 and AD. The GABRA2 rs279858 association was observed in the SAGE data sets with a combined P of 9 × 10(-6) (OR=1.17 (1.09, 1.26)). When all of these data sets, including our samples, were meta-analyzed, associations of both GABRA2 single-nucleotide polymorphisms remained (for rs567926, P=7 × 10(-5) (OR=1.18 (1.09, 1.29)) in all the studies, and P=8 × 10(-6) (OR=1.25 (1.13, 1.38)) in subjects of European ancestry and for rs279858, P=5 × 10(-6) (OR=1.18 (1.1, 1.26)) in subjects of European ancestry. Findings from this extensive meta-analysis of five GABAA receptor genes and substance abuse support their involvement (with the best evidence for GABRA2) in the pathogenesis of AD. Further replications with larger samples are warranted.

Indexed as

Genetic Predisposition to DiseaseAlcoholismBlack PeopleComputational BiologyFemaleGenotypeHumansLinkage DisequilibriumMaleOdds RatioPolymorphism, Single NucleotideReceptors, GABA-AReference ValuesRetrospective StudiesWhite PeopleGABRA2 protein, humanReceptors, GABA-A

Identifiers

PMID24136292
PMCPMC3924525
OpenAlexW2063434016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.