ArticleMolecular phylogenetics and evolution2014
Dinoflagellate phylogeny revisited: using ribosomal proteins to resolve deep branching dinoflagellate clades.
Article in Molecular phylogenetics and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
40 citing papers in PubMed.
- Collectors, not hoarders: Complex gene structures in Amphidinium carterae revealed through nanopore sequencing.BMC genomics · 2025Article
- Some Insights into the Inventiveness of Dinoflagellates: Coming Back to the Cell Biology of These Protists.Microorganisms · 2025Review
- The nuclear and mitochondrial genomes of amoebophrya sp. ex Karlodinium veneficum.G3 (Bethesda, Md.) · 2025Article
- A Comparison of Dinoflagellate Thiolation Domain Binding Proteins Using In Vitro and Molecular Methods.Marine drugs · 2022Article
- Vitamin BFundamental research · 2022Article
- A Global Approach to Estimating the Abundance and Duplication of Polyketide Synthase Domains in Dinoflagellates.Evolutionary bioinformatics online · 2021Article
- A Novel Parasitoid of Marine Dinoflagellates,Frontiers in microbiology · 2021Article
- New Perspectives Related to the Bioluminescent System in Dinoflagellates:International journal of molecular sciences · 2020Review
- Nuclear Gene Transformation in the DinoflagellateMicroorganisms · 2020Article
- The Biochemistry and Evolution of the Dinoflagellate Nucleus.Microorganisms · 2019Review
- Lacking catalase, a protistan parasite draws on its photosynthetic ancestry to complete an antioxidant repertoire with ascorbate peroxidase.BMC evolutionary biology · 2019Article
- DNA Damage Response Pathways in Dinoflagellates.Microorganisms · 2019Article
- An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome.Science advances · 2019Article
- Article
- HThe Journal of eukaryotic microbiology · 2018Article
- Translation and Translational Control in Dinoflagellates.Microorganisms · 2018Review
- Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences.Protoplasma · 2018Article
- Distribution and Evolution of Peroxisomes in Alveolates (Apicomplexa, Dinoflagellates, Ciliates).Genome biology and evolution · 2018Article
- Chromosome structures: reduction of certain problems with unequal gene content and gene paralogs to integer linear programming.BMC bioinformatics · 2017Article
- Use of Antibiotics for Maintenance of Axenic Cultures of Amphidinium carterae for the Analysis of Translation.Marine drugs · 2017Article
Corrections and comments
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Authors and funding
7 authors.
Funding
Abstract
The alveolates are composed of three major lineages, the ciliates, dinoflagellates, and apicomplexans. Together these 'protist' taxa play key roles in primary production and ecology, as well as in illness of humans and other animals. The interface between the dinoflagellate and apicomplexan clades has been an area of recent discovery, blurring the distinction between these two clades. Moreover, phylogenetic analysis has yet to determine the position of basal dinoflagellate clades hence the deepest branches of the dinoflagellate tree currently remain unresolved. Large-scale mRNA sequencing was applied to 11 species of dinoflagellates, including strains of the syndinean genera Hematodinium and Amoebophrya, parasites of crustaceans and dinoflagellates, respectively, to optimize and update the dinoflagellate tree. From the transcriptome-scale data a total of 73 ribosomal protein-coding genes were selected for phylogeny. After individual gene orthology assessment, the genes were concatenated into a >15,000 amino acid alignment with 76 taxa from dinoflagellates, apicomplexans, ciliates, and the outgroup heterokonts. Overall the tree was well resolved and supported, when the data was subsampled with gblocks or constraint trees were tested with the approximately unbiased test. The deepest branches of the dinoflagellate tree can now be resolved with strong support, and provides a clearer view of the evolution of the distinctive traits of dinoflagellates.
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