Evidence map›Paper›PMID 24134212›Full record

ArticleJournal of the American Chemical Society2013

Simultaneous dual protein labeling using a triorthogonal reagent.

Mohammad Rashidian, Sidath C Kumarapperuma, Kari Gabrielse, Adrian Fegan, Carston R Wagner, Mark D Distefano

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Promiscuous Enzymes for Residue-Specific Peptide and Protein Late-Stage Functionalization.Chembiochem : a European journal of chemical biology · 2023
    Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Bivalent EGFR-Targeting DARPin-MMAE Conjugates.International journal of molecular sciences · 2022
    Article
  12. Article
  13. Review
  14. Contemporary Approaches for Site-Selective Dual Functionalization of Proteins.Angewandte Chemie (International ed. in English) · 2021
    Review
  15. Bifunctional Reagents for Formylglycine Conjugation: Pitfalls and Breakthroughs.Chembiochem : a European journal of chemical biology · 2020
    Article
  16. Article
  17. Article
  18. ChemoenzymaticJournal of the American Chemical Society · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mohammad RashidianDepartment of Chemistry, and §Department of Medicinal Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Sidath C Kumarapperuma
Kari Gabrielse
Adrian Fegan
Carston R Wagner
Mark D Distefano

Funding

Chemistry-Biology Interface Training GrantT32GM008700 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1999 to 2018
$4.0M
MECHANISM AND FUNCTION OF PROTEIN PRENYLATIONR01GM058842 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1998 to 2010
$2.6M
Enzymatic Protein LabelingR01GM084152 · NIGMS · UNIVERSITY OF MINNESOTA · PI DISTEFANO, MARK D · 2010 to 2019
$2.6M
Chemically Controlled Assembly of Therapuetic Protein NanostrcturesR01CA120116 · NCI · UNIVERSITY OF MINNESOTA · PI WAGNER, CARSTON R. · 2007 to 2010
$1.2M
NCI NIH HHS CA120116NCI NIH HHS R01 CA120116NIGMS NIH HHS GM058842NIGMS NIH HHS GM084152NIGMS NIH HHS R01 GM058842NIGMS NIH HHS R01 GM084152NIGMS NIH HHS T32 GM008700
6 · The paper itself

Abstract

Construction of heterofunctional proteins is a rapidly emerging area of biotherapeutics. Combining a protein with other moieties, such as a targeting element, a toxic protein or small molecule, and a fluorophore or polyethylene glycol (PEG) group, can improve the specificity, functionality, potency, and pharmacokinetic profile of a protein. Protein farnesyl transferase (PFTase) is able to site-specifically and quantitatively prenylate proteins containing a C-terminal CaaX-box amino acid sequence with various modified isoprenoids. Here, we describe the design, synthesis, and application of a triorthogonal reagent, 1, that can be used to site-specifically incorporate an alkyne and aldehyde group simultaneously into a protein. To illustrate the capabilities of this approach, a protein was enzymatically modified with compound 1 followed by oxime ligation and click reaction to simultaneously incorporate an azido-tetramethylrhodamine (TAMRA) fluorophore and an aminooxy-PEG moiety. This was performed with both a model protein [green fluorescent protein (GFP)] as well as a therapeutically useful protein [ciliary neurotrophic factor (CNTF)]. Next, a protein was enzymatically modified with compound 1 followed by coupling to an azido-bis-methotrexate dimerizer and aminooxy-TAMRA. Incubation of that construct with a dihydrofolate reductase (DHFR)-DHFR-anti-CD3 fusion protein resulted in the self-assembly of nanoring structures that were endocytosed into T-leukemia cells and visualized therein. These results highlight how complex multifunctional protein assemblies can be prepared using this facile triorthogonal approach.

Indexed as

Staining and LabelingCiliary Neurotrophic FactorGreen Fluorescent ProteinsModels, MolecularMolecular StructurePolyisoprenyl PhosphatesSesquiterpenesCiliary Neurotrophic Factorfarnesyl pyrophosphateGreen Fluorescent ProteinsPolyisoprenyl PhosphatesSesquiterpenes

Identifiers

PMID24134212
PMCPMC3873327

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.