Evidence map›Paper›PMID 24133217›Full record

ArticleThe Journal of biological chemistry2013

The strawberry pathogenesis-related 10 (PR-10) Fra a proteins control flavonoid biosynthesis by binding to metabolic intermediates.

Ana Casañal, Ulrich Zander, Cristina Muñoz, Florine Dupeux, Irene Luque, Miguel Angel Botella, Wilfried Schwab, Victoriano Valpuesta, José A Marquez

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Tuning reductase activity in monoterpene indole alkaloid biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Plants (Basel, Switzerland) · 2025
    Article
  5. Article
  6. The evolution of flavonoid biosynthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  7. Article
  8. Review
  9. Article
  10. Deciphering the Interaction betweenLife (Basel, Switzerland) · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Role of Small Molecule Ligands in IgE-Mediated Allergy.Current allergy and asthma reports · 2023
    Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. The Structural Flexibility of PR-10 Food Allergens.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 3 countries.

Ana CasañalFrom the Instituto de Hortofruticultura Subtropical y Mediterránea (IHSM-UMA-Consejo Superior de Investigaciones Científicas), Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, 29071 Málaga, Spain.
Ulrich Zander
Cristina Muñoz
Florine Dupeux
Irene Luque
Miguel Angel Botella
Wilfried Schwab
Victoriano Valpuesta
José A Marquez
European Molecular Biology Laboratory · FRUniversidad de Málaga · ESConsejo Superior de Investigaciones Científicas · ESInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" · ESTechnical University of Munich · DEUniversidad de Granada · ESUniversité Grenoble Alpes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pathogenesis-related 10 (PR-10) proteins are involved in many aspects of plant biology but their molecular function is still unclear. They are related by sequence and structural homology to mammalian lipid transport and plant abscisic acid receptor proteins and are predicted to have cavities for ligand binding. Recently, three new members of the PR-10 family, the Fra a proteins, have been identified in strawberry, where they are required for the activity of the flavonoid biosynthesis pathway, which is essential for the development of color and flavor in fruits. Here, we show that Fra a proteins bind natural flavonoids with different selectivity and affinities in the low μm range. The structural analysis of Fra a 1 E and a Fra a 3-catechin complex indicates that loops L3, L5, and L7 surrounding the ligand-binding cavity show significant flexibility in the apo forms but close over the ligand in the Fra a 3-catechin complex. Our findings provide mechanistic insight on the function of Fra a proteins and suggest that PR-10 proteins, which are widespread in plants, may play a role in the control of secondary metabolic pathways by binding to metabolic intermediates.

Indexed as

Amino Acid SequenceBinding SitesCatechinCrystallography, X-RayFlavonoidsFragariaLigandsMetabolic Networks and PathwaysModels, MolecularMolecular Sequence DataPlant ProteinsProtein BindingProtein ConformationProtein Interaction Domains and MotifsSequence Homology, Amino AcidCatechinFlavonoidsLigandspathogenesis-related proteins, plantPlant ProteinsCrystal StructureFlavonoidsPlant BiochemistryPlant Molecular BiologySecondary Metabolism

Identifiers

PMID24133217
PMCPMC3853281
OpenAlexW2128446478

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.