Evidence map›Paper›PMID 24132148›Full record

ArticleInternational journal of molecular sciences2013

Structural insights into a novel interkingdom signaling circuit by cartography of the ligand-binding sites of the homologous quorum sensing LuxR-family.

Sonia Covaceuszach, Giuliano Degrassi, Vittorio Venturi, Doriano Lamba

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Frontiers in microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. LuxR Solos in the Plant EndophyteApplied and environmental microbiology · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Dialkylresorcinols as bacterial signaling molecules.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  12. Studies on synthetic LuxR solo hybrids.Frontiers in cellular and infection microbiology · 2015
    Article
  13. XocR, a LuxR solo required for virulence in Xanthomonas oryzae pv. oryzicola.Frontiers in cellular and infection microbiology · 2015
    Article
  14. Census of solo LuxR genes in prokaryotic genomes.Frontiers in cellular and infection microbiology · 2015
    Article
  15. LuxR solos in Photorhabdus species.Frontiers in cellular and infection microbiology · 2014
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sonia CovaceuszachInstitute of Crystallography, National Research Council, Trieste Outstation, Area Science Park-Basovizza, S.S. n° 14 Km 163.5, I-34149 Trieste, Italy. venturi@icgeb.org.
Giuliano Degrassi
Vittorio Venturi
Doriano Lamba

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent studies have identified a novel interkingdom signaling circuit, via plant signaling molecules, and a bacterial sub-family of LuxR proteins, bridging eukaryotes and prokaryotes. Indeed pivotal plant-bacteria interactions are regulated by the so called Plant Associated Bacteria (PAB) LuxR solo regulators that, although closely related to the quorum sensing (QS) LuxR family, do not bind or respond to canonical quorum sensing N-acyl homoserine lactones (AHLs), but only to specific host plant signal molecules. The large body of structural data available for several members of the QS LuxR family complexed with different classes of ligands (AHLs and other compounds), has been exploited to dissect the cartography of their regulatory domains through structure-based multiple sequence alignments, structural superimposition and a comparative analysis of the contact residues involved in ligand binding. In the absence of experimentally determined structures of members of the PAB LuxR solos subfamily, an homology model of its prototype OryR is presented, aiming to elucidate the architecture of its ligand-binding site. The obtained model, in combination with the cartography of the regulatory domains of the homologous QS LuxRs, provides novel insights into the 3D structure of its ligand-binding site and unveils the probable molecular determinants responsible for differences in selectivity towards specific host plant signal molecules, rather than to canonical QS compounds.

Indexed as

Amino Acid SequenceBinding SitesLigandsMolecular Sequence DataPlantsQuorum SensingRepressor ProteinsSequence AlignmentSignal TransductionTrans-ActivatorsLigandsLuxR autoinducer binding proteinsRepressor ProteinsTrans-Activators

Identifiers

PMID24132148
PMCPMC3821632

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.