ArticleThe ISME journal2014
Seasonal variation in the metatranscriptomes of a Thaumarchaeota population from SE USA coastal waters.
Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 62 citations in OpenAlex.
- Dynamics and Eco-Genomics of Baltic Sea Nitrifiers: Seasonality, Niches, Interactions and Genomic Uniqueness.Environmental microbiology · 2026Article
- Dynamics and activity of an ammonia-oxidizing archaea bloom in South San Francisco Bay.The ISME journal · 2024Article
- Transitions in nitrogen and organic matter form and concentration correspond to bacterial population dynamics in a hypoxic urban estuary.Biogeochemistry · 2023Article
- Microbial Communities in Saltpan Sediments Show Tolerance to Mars Analog Conditions, but Susceptibility to Chloride and Perchlorate Toxicity.Astrobiology · 2022Article
- Differentiated Evolutionary Strategies of Genetic Diversification in Atlantic and Pacific Thaumarchaeal Populations.mSystems · 2022Article
- Physical mixing in coastal waters controls and decouples nitrification via biomass dilution.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay.Microbial ecology · 2021Article
- The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Environmental Conditions of Arctic Lagoons.Frontiers in microbiology · 2021Article
- Transcriptional Patterns of Biogeochemically Relevant Marker Genes by Temperate Marine Bacteria.Frontiers in microbiology · 2020Article
- Metabarcoding assessment of prokaryotic and eukaryotic taxa in sediments from Stellwagen Bank National Marine Sanctuary.Scientific reports · 2019Article
- Coastal Ocean Metagenomes and Curated Metagenome-Assembled Genomes from Marsh Landing, Sapelo Island (Georgia, USA).Microbiology resource announcements · 2019Article
- Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes.The ISME journal · 2019Article
- Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure.PloS one · 2019Article
- Article
- Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight.The ISME journal · 2018Article
- Metatranscriptomic analysis of prokaryotic communities active in sulfur and arsenic cycling in Mono Lake, California, USA.The ISME journal · 2017Article
- Contribution of ammonia oxidation to chemoautotrophy in Antarctic coastal waters.The ISME journal · 2016Article
- Spatial isolation and environmental factors drive distinct bacterial and archaeal communities in different types of petroleum reservoirs in China.Scientific reports · 2016Article
- Communities of ammonia oxidizers at different stages of Spartina alterniflora invasion in salt marshes of Yangtze River estuary.Journal of microbiology (Seoul, Korea) · 2015Article
- Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We used a combination of metatranscriptomic analyses and quantitative PCR (qPCR) to study seasonal changes in Thaumarchaeota populations from a salt marsh-dominated estuary. Surface waters (0.5 m depth) were sampled quarterly at Marsh Landing, Sapelo Island, GA, USA over a 3-year period. We found a mid-summer peak in Thaumarchaeota abundance measured by qPCR of either 16S rRNA or amoA genes in each of the 3 years. Thaumarchaeota were 100-1000-fold more abundant during the peak than at other times of the year, whereas the abundance of ammonia- and nitrite-oxidizing Bacteria varied <10-fold over the same period. Analysis of the microdiversity of several highly transcribed genes in 20 metatranscriptomes from a 1-year subset of these samples showed that the transcriptionally active population consisted of 2 or 3 dominant phylotypes that differed between successive summers. This shift appeared to have begun during the preceding winter and spring. Transcripts from the same genes dominated the Thaumarchaeota mRNA pool throughout the year, with genes encoding proteins believed to be involved in nitrogen uptake and oxidation, and two hypothetical proteins being the most abundant transcripts in all libraries. Analysis of individual genes over the seasonal cycle suggested that transcription was tied more closely to variation in growth rates than to seasonal changes in environmental conditions. Day-night differences in the relative abundance of transcripts for ribosomal proteins suggested diurnal variation in Thaumarchaeota growth.
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