Evidence map›Paper›PMID 24132079›Full record

ArticleThe ISME journal2014

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish.

Lin Ye, Jon Amberg, Duane Chapman, Mark Gaikowski, Wen-Tso Liu

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 309 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. DietaryFrontiers in microbiology · 2026
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  11. Seasonal and Regional Dynamics of the Intestinal Microbiota inAnimals : an open access journal from MDPI · 2025
    Article
  12. Review
  13. Review
  14. Sex-specific gut microbiome dynamics inFrontiers in microbiology · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lin YeDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Jon AmbergUpper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, WI, USA.
Duane ChapmanColumbia Environmental Research Center, United States Geological Survey, Columbia, MO, USA.
Mark GaikowskiUpper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, WI, USA.
Wen-Tso LiuDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA. wtliu@illinois.edu.
United States Geological Survey · USUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gut microbiota of invasive Asian silver carp (SVCP) and indigenous planktivorous gizzard shad (GZSD) in Mississippi river basin were compared using 16S rRNA gene pyrosequencing. Analysis of more than 440 000 quality-filtered sequences obtained from the foregut and hindgut of GZSD and SVCP revealed high microbial diversity in these samples. GZSD hindgut (GZSD_H) samples (n=23) with >7000 operational taxonomy units (OTUs) exhibited the highest alpha-diversity indices followed by SVCP foregut (n=15), GZSD foregut (n=9) and SVCP hindgut (SVCP_H) (n=24). UniFrac distance-based non-metric multidimensional scaling (NMDS) analysis showed that the microbiota of GZSD_H and SVCP_H were clearly separated into two clusters: samples in the GZSD cluster were observed to vary by sampling location and samples in the SVCP cluster by sampling date. NMDS further revealed distinct microbial community between foregut to hindgut for individual GZSD and SVCP. Cyanobacteria, Proteobacteria, Actinobacteria and Bacteroidetes were detected as the predominant phyla regardless of fish or gut type. The high abundance of Cyanobacteria observed was possibly supported by their role as the fish's major food source. Furthermore, unique and shared OTUs and OTUs in each gut type were identified, three OTUs from the order Bacteroidales, the genus Bacillariophyta and the genus Clostridium were found significantly more abundant in GZSD_H (14.9-22.8%) than in SVCP_H (0.13-4.1%) samples. These differences were presumably caused by the differences in the type of food sources including bacteria ingested, the gut morphology and digestion, and the physiological behavior between GZSD and SVCP.

Indexed as

MicrobiotaAnimalsBacteroidetesCarpsCyanobacteriaGastrointestinal TractGenes, rRNAIntroduced SpeciesPhylogenyProteobacteriaRiversRNA, Ribosomal, 16SUnited StatesRNA, Ribosomal, 16S

Identifiers

PMID24132079
PMCPMC3930320
OpenAlexW2047663757

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.