Evidence map›Paper›PMID 24130859›Full record

ArticlePloS one2013

Transcriptomic analysis of Paulownia infected by Paulownia witches'-broom Phytoplasma.

Hai-Qing Mou, Jie Lu, Shui-Fang Zhu, Cai-Li Lin, Guo-Zhong Tian, Xia Xu, Wen-Jun Zhao

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
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  14. Review
  15. Article
  16. Phytoplasma-induced Changes in the Acetylome and Succinylome ofMolecular & cellular proteomics : MCP · 2019
    Article
  17. A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1-a comparative genomics viewpoint.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019
    Article
  18. Article
  19. Article
  20. ceRNA Cross-Talk in Paulownia Witches' Broom Disease.International journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hai-Qing MouInstitute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, China.
Jie Lu
Shui-Fang Zhu
Cai-Li Lin
Guo-Zhong Tian
Xia Xu
Wen-Jun Zhao
Chinese Academy of Inspection and Quarantine · CNInstitute of Forest Ecology, Environment and Protection · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytoplasmas are plant pathogenic bacteria that have no cell wall and are responsible for major crop losses throughout the world. Phytoplasma-infected plants show a variety of symptoms and the mechanisms they use to physiologically alter the host plants are of considerable interest, but poorly understood. In this study we undertook a detailed analysis of Paulownia infected by Paulownia witches'-broom (PaWB) Phytoplasma using high-throughput mRNA sequencing (RNA-Seq) and digital gene expression (DGE). RNA-Seq analysis identified 74,831 unigenes, which were subsequently used as reference sequences for DGE analysis of diseased and healthy Paulownia in field grown and tissue cultured plants. Our study revealed that dramatic changes occurred in the gene expression profile of Paulownia after PaWB Phytoplasma infection. Genes encoding key enzymes in cytokinin biosynthesis, such as isopentenyl diphosphate isomerase and isopentenyltransferase, were significantly induced in the infected Paulownia. Genes involved in cell wall biosynthesis and degradation were largely up-regulated and genes related to photosynthesis were down-regulated after PaWB Phytoplasma infection. Our systematic analysis provides comprehensive transcriptomic data about plants infected by Phytoplasma. This information will help further our understanding of the detailed interaction mechanisms between plants and Phytoplasma.

Indexed as

Gene Expression ProfilingGenomicsMagnoliopsidaMolecular Sequence AnnotationPhytoplasmaPlant DiseasesSequence Analysis, RNA

Identifiers

PMID24130859
PMCPMC3795066
OpenAlexW2070330931

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.