Evidence map›Paper›PMID 24130510›Full record

ArticlePLoS genetics2013

Preferential binding to Elk-1 by SLE-associated IL10 risk allele upregulates IL10 expression.

Daisuke Sakurai, Jian Zhao, Yun Deng, Jennifer A Kelly, Elizabeth E Brown, John B Harley, Sang-Cheol Bae, Marta E Alarcόn-Riquelme, BIOLUPUS and GENLES networks, Jeffrey C Edberg and 36 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
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  14. Dysregulated heme oxygenase-1Arthritis research & therapy · 2018
    Article
  15. Updates in Lupus Genetics.Current rheumatology reports · 2017
    Review
  16. Etv5 Regulates IL-10 Production in Th Cells.Journal of immunology (Baltimore, Md. : 1950) · 2017
    Article
  17. Article
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 19 institutions in 8 countries.

Daisuke SakuraiDivision of Rheumatology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America.
Jian Zhao
Yun Deng
Jennifer A Kelly
Elizabeth E Brown
John B Harley
Sang-Cheol Bae
Marta E Alarcόn-Riquelme
BIOLUPUS and GENLES networks
Jeffrey C Edberg
Robert P Kimberly
Rosalind Ramsey-Goldman
Michelle A Petri
John D Reveille
Luis M Vilá
Graciela S Alarcón
Kenneth M Kaufman
Timothy J Vyse
Chaim O Jacob
Patrick M Gaffney
Kathy Moser Sivils
Judith A James
Diane L Kamen
Gary S Gilkeson
Timothy B Niewold
Joan T Merrill
R Hal Scofield
Lindsey A Criswell
Anne M Stevens
Susan A Boackle
Jae-Hoon Kim
Jiyoung Choi
Bernardo A Pons-Estel
Argentine Collaborative Group
Barry I Freedman
Juan-Manuel Anaya
Javier Martin
C Yung Yu
Deh-Ming Chang
Yeong Wook Song
Carl D Langefeld
Weiling Chen
Jennifer M Grossman
Rita M Cantor
Bevra H Hahn
Betty P Tsao
University of California, Los Angeles · USOklahoma Medical Research Foundation · USCincinnati Children's Hospital Medical Center · USHanyang University Seoul Hospital · KRUniversity of Alabama at Birmingham · USCentro Científico Tecnólogico - Rosario · ARInstituto de Parasitología y Biomedicina "López - Neyra" · ESMayo Clinic · USMedical University of South Carolina · USNationwide Children's Hospital · USNorthwestern University · USSeattle Children's Hospital · USUnited States Department of Veterans Affairs · USUniversity of Puerto Rico, Medical Sciences Campus · PRUniversity of Southern California · USJohns Hopkins University · USNational Defense Medical Center · TWSeoul National University · KRUniversidad del Rosario · CO

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Engaging University of California Stakeholders for Biorespository ResearchUL1TR000004 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$78.0M
Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
Tracking and Evaluation CoreU54GM104938 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI PAUL G SPICER · 2013 to 2026
$68.2M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
UCLA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033176 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2011 to 2011
$15.5M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
BLRD VA I01 BX001834NCATS NIH HHS UL1 TR000004NCATS NIH HHS UL1TR000004NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1TR000124NCATS NIH HHS UL1 TR000150NCATS NIH HHS UL1 TR000154NCATS NIH HHS UL1 TR000165NCATS NIH HHS UL1TR000165NCATS NIH HHS UL1 TR001082NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA141700NCI NIH HHS R01CA141700NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1RR024999NCRR NIH HHS UL1 RR025005NCRR NIH HHS UL1RR025005NCRR NIH HHS UL1 RR025014NCRR NIH HHS UL1RR025014-02NCRR NIH HHS UL1 RR025741NCRR NIH HHS UL1RR025741NCRR NIH HHS UL1 RR029882NCRR NIH HHS UL1RR029882NCRR NIH HHS UL1 RR033176NCRR NIH HHS UL1RR033176NIAID NIH HHS K08 AI083790NIAID NIH HHS K08AI083790NIAID NIH HHS K24 AI078004NIAID NIH HHS L30 AI071651NIAID NIH HHS L30AI071651NIAID NIH HHS P01 AI083194NIAID NIH HHS P01AI083194NIAID NIH HHS R01 AI024717NIAID NIH HHS R01 AI063274NIAID NIH HHS R01AI063274NIAID NIH HHS R21 AI070304NIAID NIH HHS R21AI070304NIAID NIH HHS R37 AI024717NIAID NIH HHS U01 AI090909NIAID NIH HHS U01AI090909NIAID NIH HHS U01 AI101934NIAID NIH HHS U01AI101934NIAID NIH HHS U19 AI082714NIAID NIH HHS U19AI082714NIAMS NIH HHS 1R01AR054459NIAMS NIH HHS K24 AR002138NIAMS NIH HHS K24AR002138NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P01AR049084NIAMS NIH HHS P01 AR052915NIAMS NIH HHS P01AR052915NIAMS NIH HHS P30 AR048311NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P30AR053483NIAMS NIH HHS P30AR48311NIAMS NIH HHS P602AR30692NIAMS NIH HHS P60 AR030692NIAMS NIH HHS P60 AR049459NIAMS NIH HHS P60AR049459NIAMS NIH HHS P60 AR053308NIAMS NIH HHS P60AR053308NIAMS NIH HHS P60 AR062755NIAMS NIH HHS R01 AR033062NIAMS NIH HHS R01 AR043274NIAMS NIH HHS R01AR043274NIAMS NIH HHS R01 AR043727NIAMS NIH HHS R01 AR043814NIAMS NIH HHS R01AR043814NIAMS NIH HHS R01 AR051545NIAMS NIH HHS R01AR051545-01A2NIAMS NIH HHS R01 AR054459NIAMS NIH HHS R01 AR057172NIAMS NIH HHS R01AR057172NIAMS NIH HHS R01AR33062NIAMS NIH HHS R01AR43727NIAMS NIH HHS RC1 AR058621NIAMS NIH HHS RC1AR058621NIAMS NIH HHS RC2 AR058959NIAMS NIH HHS RC2AR058959NIGMS NIH HHS P30 GM103510NIGMS NIH HHS P30GM103510NIGMS NIH HHS U54 GM104938
6 · The paper itself

Abstract

Immunoregulatory cytokine interleukin-10 (IL-10) is elevated in sera from patients with systemic lupus erythematosus (SLE) correlating with disease activity. The established association of IL10 with SLE and other autoimmune diseases led us to fine map causal variant(s) and to explore underlying mechanisms. We assessed 19 tag SNPs, covering the IL10 gene cluster including IL19, IL20 and IL24, for association with SLE in 15,533 case and control subjects from four ancestries. The previously reported IL10 variant, rs3024505 located at 1 kb downstream of IL10, exhibited the strongest association signal and was confirmed for association with SLE in European American (EA) (P = 2.7×10⁻⁸, OR = 1.30), but not in non-EA ancestries. SNP imputation conducted in EA dataset identified three additional SLE-associated SNPs tagged by rs3024505 (rs3122605, rs3024493 and rs3024495 located at 9.2 kb upstream, intron 3 and 4 of IL10, respectively), and SLE-risk alleles of these SNPs were dose-dependently associated with elevated levels of IL10 mRNA in PBMCs and circulating IL-10 protein in SLE patients and controls. Using nuclear extracts of peripheral blood cells from SLE patients for electrophoretic mobility shift assays, we identified specific binding of transcription factor Elk-1 to oligodeoxynucleotides containing the risk (G) allele of rs3122605, suggesting rs3122605 as the most likely causal variant regulating IL10 expression. Elk-1 is known to be activated by phosphorylation and nuclear localization to induce transcription. Of interest, phosphorylated Elk-1 (p-Elk-1) detected only in nuclear extracts of SLE PBMCs appeared to increase with disease activity. Co-expression levels of p-Elk-1 and IL-10 were elevated in SLE T, B cells and monocytes, associated with increased disease activity in SLE B cells, and were best downregulated by ERK inhibitor. Taken together, our data suggest that preferential binding of activated Elk-1 to the IL10 rs3122605-G allele upregulates IL10 expression and confers increased risk for SLE in European Americans.

Indexed as

Genetic Predisposition to DiseaseAllelesAsian Peopleets-Domain Protein Elk-1Gene Expression RegulationGenome-Wide Association StudyGenotypeHaplotypesHispanic or LatinoHumansInterleukin-10IntronsLupus Erythematosus, SystemicPolymorphism, Single NucleotideProtein BindingUp-RegulationELK1 protein, humanets-Domain Protein Elk-1Interleukin-10

Identifiers

PMID24130510
PMCPMC3794920
OpenAlexW2009056315

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.