Evidence map›Paper›PMID 24130509›Full record

ArticlePLoS genetics2013

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection.

Nicholas J Croucher, Andrea M Mitchell, Katherine A Gould, Donald Inverarity, Lars Barquist, Theresa Feltwell, Maria C Fookes, Simon R Harris, Janina Dordel, Susannah J Salter and 8 more

Abstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Microbial genomics · 2024
    Article
  6. Article
  7. Parapneumonic effusions related toBMJ open respiratory research · 2023
    Article
  8. Article
  9. Role of PatAB Transporter in Efflux of Levofloxacin inAntibiotics (Basel, Switzerland) · 2022
    Article
  10. Streptococcus pneumoniae serotype 3 genotypes in invasive isolates from Colombia.Biomedica : revista del Instituto Nacional de Salud · 2021
    Article
  11. Article
  12. Article
  13. Evolution ofGenes · 2019
    Article
  14. Article
  15. Genomics and Genetics ofMicrobiology spectrum · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Nicholas J CroucherPathogen Genomics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom ; Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, United States of America.
Andrea M Mitchell
Katherine A Gould
Donald Inverarity
Lars Barquist
Theresa Feltwell
Maria C Fookes
Simon R Harris
Janina Dordel
Susannah J Salter
Sarah Browall
Helena Zemlickova
Julian Parkhill
Staffan Normark
Birgitta Henriques-Normark
Jason Hinds
Tim J Mitchell
Stephen D Bentley

Funding

Wellcome TrustWellcome Trust 086547Wellcome Trust 098051
6 · The paper itself

Abstract

Streptococcus pneumoniae of serotype 3 possess a mucoid capsule and cause disease associated with high mortality rates relative to other pneumococci. Phylogenetic analysis of a complete reference genome and 81 draft sequences from clonal complex 180, the predominant serotype 3 clone in much of the world, found most sampled isolates belonged to a clade affected by few diversifying recombinations. However, other isolates indicate significant genetic variation has accumulated over the clonal complex's entire history. Two closely related genomes, one from the blood and another from the cerebrospinal fluid, were obtained from a patient with meningitis. The pair differed in their behaviour in a mouse model of disease and in their susceptibility to antimicrobials, with at least some of these changes attributable to a mutation that up-regulated the patAB efflux pump. This indicates clinically important phenotypic variation can accumulate rapidly through small alterations to the genotype.

Indexed as

Genome, BacterialMutationPhylogenyAnimalsGenetic VariationHigh-Throughput Nucleotide SequencingHumansMeningitisMiceSerotypingStreptococcus pneumoniae

Identifiers

PMID24130509
PMCPMC3794909

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.