ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
Genome-wide microsatellite characterization and marker development in the sequenced Brassica crop species.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 45 papers.
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Who cites it
45 citing papers in PubMed, 98 citations in OpenAlex.
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- Genome-Wide Microsatellite Characterization and Molecular Marker Development of Himalayan Griffon (Animals : an open access journal from MDPI · 2025Article
- Fine mapping and identification of the geneFrontiers in plant science · 2025Article
- Application of an Anchor Mapping of Alien Chromosome (AMAC) Fragment Localization Method in the Identification of Radish Chromosome Segments in the Progeny of Rape-Radish Interspecific Hybrids.International journal of molecular sciences · 2024Article
- Genetic dissection of morphological variation between cauliflower and a rapid cycling Brassica oleracea line.G3 (Bethesda, Md.) · 2023Article
- Genome-wide characterization and development of SSR markers for genetic diversity analysis in northwestern Himalayas Walnut (3 Biotech · 2023Article
- First Report on Development of Genome-Wide Microsatellite Markers for Stock (Plants (Basel, Switzerland) · 2023Article
- Development and utility of SSR markers based onFrontiers in plant science · 2023Article
- Development of genome-specific SSR markers for the identification of introgressed segments of3 Biotech · 2022Article
- Alkaloid production and response to natural adverse conditions inBiotechnologia · 2022Article
- Agro-morphological and molecular diversity in different maturity groups of Indian cauliflower (Brassica oleracea var. botrytis L.).PloS one · 2021Article
- Comprehensive Characterization and Validation of Chromosome-Specific Highly Polymorphic SSR Markers From Pomegranate (Frontiers in plant science · 2021Article
- Development of EST-SSR markers and association mapping with floral traits in Syringa oblata.BMC plant biology · 2020Article
- Genome-wide analysis of microsatellite and sex-linked marker identification in Gleditsia sinensis.BMC plant biology · 2020Article
- Genome-wide characterization of simple sequence repeats in Palmae genomes.Genes & genomics · 2020Article
- Identification and application of markers closely linked to the restorer gene (Breeding science · 2019Article
- Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species.Scientific reports · 2019Article
- Fine mapping and discovery of candidate genes for seed size in watermelon by genome survey sequencing.Scientific reports · 2018Article
- Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana.BMC genomics · 2018Article
- SSR marker variations in Brassica species provide insight into the origin and evolution ofHereditas · 2018Article
Corrections and comments
- Erratum issued
Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Although much research has been conducted, the pattern of microsatellite distribution has remained ambiguous, and the development/utilization of microsatellite markers has still been limited/inefficient in Brassica, due to the lack of genome sequences. In view of this, we conducted genome-wide microsatellite characterization and marker development in three recently sequenced Brassica crops: Brassica rapa, Brassica oleracea and Brassica napus. The analysed microsatellite characteristics of these Brassica species were highly similar or almost identical, which suggests that the pattern of microsatellite distribution is likely conservative in Brassica. The genomic distribution of microsatellites was highly non-uniform and positively or negatively correlated with genes or transposable elements, respectively. Of the total of 115 869, 185 662 and 356 522 simple sequence repeat (SSR) markers developed with high frequencies (408.2, 343.8 and 356.2 per Mb or one every 2.45, 2.91 and 2.81 kb, respectively), most represented new SSR markers, the majority had determined physical positions, and a large number were genic or putative single-locus SSR markers. We also constructed a comprehensive database for the newly developed SSR markers, which was integrated with public Brassica SSR markers and annotated genome components. The genome-wide SSR markers developed in this study provide a useful tool to extend the annotated genome resources of sequenced Brassica species to genetic study/breeding in different Brassica species.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.