Evidence map›Paper›PMID 24129074›Full record

ArticleBiochimica et biophysica acta2013

Mutation in transforming growth factor beta induced protein associated with granular corneal dystrophy type 1 reduces the proteolytic susceptibility through local structural stabilization.

Jarl Underhaug, Heidi Koldsø, Kasper Runager, Jakob Toudahl Nielsen, Charlotte S Sørensen, Torsten Kristensen, Daniel E Otzen, Henrik Karring, Anders Malmendal, Birgit Schiøtt and 2 more

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Classic lattice corneal dystrophy: a brief review and summary of treatment modalities.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Identification of a Heterozygous Mutation in theJournal of ophthalmology · 2019
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Periostin and TGF-β-induced protein: Two peas in a pod?Critical reviews in biochemistry and molecular biology · 2015
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 2 countries.

Jarl UnderhaugCenter for Insoluble Protein Structures (inSPIN), Interdisciplinary Nanoscience Center (iNANO) and Department of Chemistry, Aarhus University, Gustav Wieds Vej 14, DK-8000 Aarhus C, Denmark; Department of Biomedicine, University of Bergen, Jonas Lies vei 91, NO-5009 Bergen, Norway.
Heidi Koldsø
Kasper Runager
Jakob Toudahl Nielsen
Charlotte S Sørensen
Torsten Kristensen
Daniel E Otzen
Henrik Karring
Anders Malmendal
Birgit Schiøtt
Jan J Enghild
Niels Chr Nielsen
Aarhus University · DK

Funding

BIGH3 WILD TYPE AND MUTANT PROTEINSR01EY012712 · NEI · DUKE UNIVERSITY · PI KLINTWORTH, GORDON KENNETH · 1999 to 2011
$2.4M
NEI NIH HHS R01 EY012712
6 · The paper itself

Abstract

Hereditary mutations in the transforming growth factor beta induced (TGFBI) gene cause phenotypically distinct corneal dystrophies characterized by protein deposition in cornea. We show here that the Arg555Trp mutant of the fourth fasciclin 1 (FAS1-4) domain of the protein (TGFBIp/keratoepithelin/βig-h3), associated with granular corneal dystrophy type 1, is significantly less susceptible to proteolysis by thermolysin and trypsin than the WT domain. High-resolution liquid-state NMR of the WT and Arg555Trp mutant FAS1-4 domains revealed very similar structures except for the region around position 555. The Arg555Trp substitution causes Trp555 to be buried in an otherwise empty hydrophobic cavity of the FAS1-4 domain. The first thermolysin cleavage in the core of the FAS1-4 domain occurs on the N-terminal side of Leu558 adjacent to the Arg555 mutation. MD simulations indicated that the C-terminal end of helix α3' containing this cleavage site is less flexible in the mutant domain, explaining the observed proteolytic resistance. This structural change also alters the electrostatic properties, which may explain increased propensity of the mutant to aggregate in vitro with 2,2,2-trifluoroethanol. Based on our results we propose that the Arg555Trp mutation disrupts the normal degradation/turnover of corneal TGFBIp, leading to accumulation and increased propensity to aggregate through electrostatic interactions.

Indexed as

Amino Acid SubstitutionCorneal Dystrophies, HereditaryMutation, MissenseProteolysisbetaIG-H3 ProteinExtracellular Matrix ProteinsHumansProtein StabilityProtein Structure, SecondaryProtein Structure, TertiaryTransforming Growth Factor betabetaIG-H3 ProteinExtracellular Matrix ProteinsTransforming Growth Factor beta2,2-Dimethyl-2-silapentane-5-sulfonateCorneal dystrophyDSSEMIEMILIN-1 domainFAS1FAS1-4fasciclin 1 domainfourth FAS1 domain of TGFBIpGCDgranular corneal dystrophyIPTGisopropyl β-d-1-thiogalactopyranosidelattice corneal dystrophyLBLCDLysogeny brothMDmolecular dynamicsNMRNMR structurenuclear magnetic resonanceODoptical densityPDBProtein aggregationProtein Data BankProtein misfolding diseasesProteolytic degradationRDCresidual dipolar couplingsRMSDRMSFroot-mean-square deviationroot-mean-square fluctuationsmall ubiquitin-like modifierSUMOTBCDTGFBITGFBIpThiel–Behnke corneal dystrophytransforming growth factor beta induced genetransforming growth factor beta induced proteinTransforming growth factor beta induced protein (TGFBIp)wild-typeWT

Identifiers

PMID24129074
PMCPMC4162128
OpenAlexW2009178842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.