Evidence map›Paper›PMID 24127590›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.

Morgane Thomas-Chollier, Lisa C Watson, Samantha B Cooper, Miles A Pufall, Jennifer S Liu, Katja Borzym, Martin Vingron, Keith R Yamamoto, Sebastiaan H Meijsing

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
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  9. Review
  10. The Non-continuum Nature of Eukaryotic Transcriptional Regulation.Advances in experimental medicine and biology · 2022
    Article
  11. Article
  12. Article
  13. Review
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  18. Review
  19. Comparing the rules of engagement of androgen and glucocorticoid receptors.Cellular and molecular life sciences : CMLS · 2017
    Review
  20. Structural hierarchy controlling dimerization and target DNA recognition in the AHR transcriptional complex.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Morgane Thomas-ChollierDepartment of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Lisa C Watson
Samantha B Cooper
Miles A Pufall
Jennifer S Liu
Katja Borzym
Martin Vingron
Keith R Yamamoto
Sebastiaan H Meijsing
University of California, San Francisco · USMax Planck Institute for Molecular Genetics · DEMax Planck Society · DEUniversity of Iowa · US

Funding

GENE REGULATION BY STEROID RECEPTOR PROTEINSR01CA020535 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YAMAMOTO, KEITH ROBERT · 1985 to 2018
$8.9M
TRAINING PROGRAM IN PEDIATRIC GASTROENTEROLOGY/NUTRITIONT32DK007762 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI James Bayrer · 1998 to 2026
$7.3M
Studies in Children with Digestive DisordersK24DK060617 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HEYMAN, MELVIN B. · 2002 to 2011
$1.6M
GENE REGULATION BY STEROID RECEPTOR PROTEINSR37CA020535 · NCI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI YAMAMOTO, KEITH ROBERT · 1990 to 1998
–
NCI NIH HHS CA020535NCI NIH HHS R01 CA020535NCI NIH HHS R37 CA020535NIDDK NIH HHS K24 DK060617NIDDK NIH HHS T32 DK007762
6 · The paper itself

Abstract

In addition to guiding proteins to defined genomic loci, DNA can act as an allosteric ligand that influences protein structure and activity. Here we compared genome-wide binding, transcriptional regulation, and, using NMR, the conformation of two glucocorticoid receptor (GR) isoforms that differ by a single amino acid insertion in the lever arm, a domain that adopts DNA sequence-specific conformations. We show that these isoforms differentially regulate gene expression levels through two mechanisms: differential DNA binding and altered communication between GR domains. Our studies suggest a versatile role for DNA in both modulating GR activity and also in directing the use of GR isoforms. We propose that the lever arm is a "fulcrum" for bidirectional allosteric signaling, conferring conformational changes in the DNA reading head that influence DNA sequence selectivity, as well as conferring changes in the dimerization domain that connect functionally with remote regulatory surfaces, thereby influencing which genes are regulated and the magnitude of their regulation.

Indexed as

Models, MolecularProtein ConformationAlternative SplicingAmino AcidsCell Line, TumorChromatin ImmunoprecipitationElectrophoretic Mobility Shift AssayGene Expression RegulationHumansImmunoblottingMicroarray AnalysisMutagenesis, InsertionalProtein IsoformsReal-Time Polymerase Chain ReactionReceptors, GlucocorticoidTranscription, GeneticAmino AcidsProtein IsoformsReceptors, Glucocorticoidalternative splicingsequence motifssteroid hormone receptor

Identifiers

PMID24127590
PMCPMC3816441
OpenAlexW2020868321

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.