Evidence map›Paper›PMID 24127225›Full record

ArticleAmerican journal of medical genetics. Part A2014

Identification of novel candidate gene loci and increased sex chromosome aneuploidy among infants with conotruncal heart defects.

Kazutoyo Osoegawa, David M Iovannisci, Bin Lin, Christina Parodi, Kathleen Schultz, Gary M Shaw, Edward J Lammer

Open access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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  6. [Research progress on genetic and epigenetic mechanisms in congenital heart disease].Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2018
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kazutoyo OsoegawaCenter for Genetics, Children's Hospital Oakland Research Institute, Children's Hospital Research Center Oakland, Oakland, California.
David M Iovannisci
Bin Lin
Christina Parodi
Kathleen Schultz
Gary M Shaw
Edward J Lammer
Children’s Institute · USStanford University · US

Funding

Chromosomal microdeletions causing heart defectsR01HL092330 · NHLBI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI KING, JANET C · 2009 to 2014
$3.6M
Conotruncal defects: genetic and nutritional riskR01HL077708 · NHLBI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI LAMMER, EDWARD JAMES · 2006 to 2010
$1.9M
Gene and Nutrient Etiologies of Human Heart DefectsR01HL085859 · NHLBI · STANFORD UNIVERSITY · PI SHAW, GARY M · 2006 to 2010
$1.7M
NHLBI NIH HHS HL077708NHLBI NIH HHS HL085859NHLBI NIH HHS HL092330NHLBI NIH HHS R01 HL077708NHLBI NIH HHS R01 HL085859NHLBI NIH HHS R01 HL092330PHS HHS U50/CCU913241
6 · The paper itself

Abstract

Congenital heart defects (CHDs) are common malformations, affecting four to eight per 1,000 total births. Conotruncal defects are an important pathogenetic subset of CHDs, comprising nearly 20% of the total. Although both environmental and genetic factors are known to contribute to the occurrence of conotruncal defects, the causes remain unknown for most. To identify novel candidate genes/loci, we used array comparative genomic hybridization to detect chromosomal microdeletions/duplications. From a population base of 974,579 total births born during 1999-2004, we screened 389 California infants born with tetralogy of Fallot or d-transposition of the great arteries. We found that 1.7% (5/288) of males with a conotruncal defect had sex chromosome aneuploidy, a sevenfold increased frequency (relative risk = 7.0; 95% confidence interval 2.9-16.9). We identified eight chromosomal microdeletions/duplications for conotruncal defects. From these duplications and deletions, we found five high priority candidate genes (GATA4, CRKL, BMPR1A, SNAI2, and ZFHX4). This is the initial report that sex chromosome aneuploidy is associated with conotruncal defects among boys. These chromosomal microduplications/deletions provide evidence that GATA4, SNAI2, and CRKL are highly dosage sensitive genes involved in outflow tract development. Genome wide screening for copy number variation can be productive for identifying novel genes/loci contributing to non-syndromic common malformations.

Indexed as

AneuploidyGenetic LociSex ChromosomesCaliforniaChromosome AberrationsChromosome DeletionChromosome DuplicationChromosomes, Human, Pair 22Comparative Genomic HybridizationDNA Copy Number VariationsFemaleGene OrderHeart Defects, CongenitalHumansInfantInfant, Newbornarray comparative genomic hybridization (array-CGH)candidate genesconotruncal heart defectsmicrodeletions/duplicationssex chromosome aneuploidy

Identifiers

PMID24127225
PMCPMC3946915
OpenAlexW2126259129

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.