Evidence map›Paper›PMID 24126912›Full record

ArticleThe Journal of biological chemistry2013

WhiB7, an Fe-S-dependent transcription factor that activates species-specific repertoires of drug resistance determinants in actinobacteria.

Santiago Ramón-García, Carol Ng, Pernille R Jensen, Manisha Dosanjh, Jan Burian, Rowan P Morris, Marc Folcher, Lindsay D Eltis, Stephan Grzesiek, Liem Nguyen and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 57 citations in OpenAlex.

  1. Tobramycin enhancesProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. WhiB-like proteins: Diversity of structure, function and mechanism.Biochimica et biophysica acta. Molecular cell research · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Beyond antibiotic resistance: thebioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. An In Vivo Model of SeparateInternational journal of molecular sciences · 2022
    Article
  12. Transcriptional regulation and drug resistance inFrontiers in cellular and infection microbiology · 2022
    Review
  13. The Iron Response ofFrontiers in cellular and infection microbiology · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Microorganisms · 2021
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Santiago Ramón-GarcíaFrom the Department of Microbiology and Immunology, Centre for Tuberculosis Research, Life Sciences Centre, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada.
Carol Ng
Pernille R Jensen
Manisha Dosanjh
Jan Burian
Rowan P Morris
Marc Folcher
Lindsay D Eltis
Stephan Grzesiek
Liem Nguyen
Charles J Thompson
University of British Columbia · CAUniversity of Basel · CHAnimal and Plant Health Agency · GBCase Western Reserve University · US

Funding

WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI Sharon L. Hillier, JONATHAN KARN · 1994 to 2026
$50.0M
Folate Metabolism in Mycobacterium tuberculosis Revisited: A Potential Drug TargeR01AI087903 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI NGUYEN, LIEM DUY · 2010 to 2014
$1.9M
CIHR MOP-82855NIAID NIH HHS P30 AI036219NIAID NIH HHS R01 AI087903
6 · The paper itself

Abstract

WhiB-like (Wbl) proteins are well known for their diverse roles in actinobacterial morphogenesis, cell division, virulence, primary and secondary metabolism, and intrinsic antibiotic resistance. Gene disruption experiments showed that three different Actinobacteria (Mycobacterium smegmatis, Streptomyces lividans, and Rhodococcus jostii) each exhibited a different whiB7-dependent resistance profile. Heterologous expression of whiB7 genes showed these resistance profiles reflected the host's repertoire of endogenous whiB7-dependent genes. Transcriptional activation of two resistance genes in the whiB7 regulon, tap (a multidrug transporter) and erm(37) (a ribosomal methyltransferase), required interaction of WhiB7 with their promoters. Furthermore, heterologous expression of tap genes isolated from Mycobacterium species demonstrated that divergencies in drug specificity of homologous structural proteins contribute to the variation of WhiB7-dependent drug resistance. WhiB7 has a specific tryptophan/glycine-rich region and four conserved cysteine residues; it also has a peptide sequence (AT-hook) at its C terminus that binds AT-rich DNA sequence motifs upstream of the promoters it activates. Targeted mutagenesis showed that these motifs were required to provide antibiotic resistance in vivo. Anaerobically purified WhiB7 from S. lividans was dimeric and contained 2.1 ± 0.3 and 2.2 ± 0.3 mol of iron and sulfur, respectively, per protomer (consistent with the presence of a 2Fe-2S cluster). However, the properties of the dimer's absorption spectrum were most consistent with the presence of an oxygen-labile 4Fe-4S cluster, suggesting 50% occupancy. These data provide the first insights into WhiB7 iron-sulfur clusters as they exist in vivo, a major unresolved issue in studies of Wbl proteins.

Indexed as

ActinobacteriaBacterial ProteinsDrug Resistance, BacterialGene Expression Regulation, BacterialHost-Pathogen InteractionsIron-Sulfur ProteinsMethyltransferasesMutagenesisMycobacterium smegmatisRhodococcusSpecies SpecificityStreptomyces lividansTranscriptional ActivationTranscription FactorsBacterial ProteinsIron-Sulfur ProteinsMethyltransferasesTranscription FactorsActinobacteriaAntibiotic ResistanceAT-hookGene RegulationIron-Sulfur ClusterIron-Sulfur ProteinRegulationTranscription

Identifiers

PMID24126912
PMCPMC3843066
OpenAlexW2153426549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.