Evidence map›Paper›PMID 24126141›Full record

ArticleMolecular & cellular proteomics : MCP2014

Various conotoxin diversifications revealed by a venomic study of Conus flavidus.

Aiping Lu, Longjin Yang, Shaoqiong Xu, Chunguang Wang

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Proteomic analysis of Red SeaThe journal of venomous animals and toxins including tropical diseases · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Venomics-Accelerated Cone Snail Venom Peptide Discovery.International journal of molecular sciences · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  17. Why do we study animal toxins?Dong wu xue yan jiu = Zoological research · 2015
    Review
  18. Conotoxin gene superfamilies.Marine drugs · 2014
    Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Aiping LuInstitute of Protein Research, School of Life Sciences and Technology, Tongji University, 1239 Siping Road, Shanghai 200092, China.
Longjin Yang
Shaoqiong Xu
Chunguang Wang
Tongji University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Conotoxins are peptide neurotoxins produced by predatory cone snails. They are mostly cysteine-rich short peptides with remarkable structural diversity. The conserved signal peptide sequences of their mRNA-encoded precursors have enabled the grouping of known conotoxins into a limited number of superfamilies. However, the conotoxins within each superfamily often present variable sequences, cysteine frameworks, and post-translational modifications. To understand better how conotoxins are diversified, we performed a venomic study with C. flavidus, an uninvestigated vermivorous Conus species, by combining transcriptomic and proteomic analyses. In order to obtain the full-length conotoxin sequences, protease digestion was not performed with the venom extraction prior to spectra acquisition via tandem mass spectrometry (MS/MS). Because conotoxins are produced from mRNA-encoded precursors by means of proteolytic cleavage, nonspecific digestion of precursors was applied during the database search. Special attention was also paid in interpreting the MS/MS spectra. All together, these analyses identified 69 nonredundant cDNA sequences and 31 conotoxin components with confident MS/MS spectra. A new Q-superfamily was also identified. More importantly, this study revealed that conotoxin-encoding transcripts are diversified by hypermutation, fragment insertion/deletion, and mutation-induced premature termination, and that a single mRNA species can produce multiple toxin products through alternative post-translational modifications and alternative cleavages of the translated precursor. These multiple diversification strategies at different levels may explain, at least in part, the diversity of conotoxins, and provide the basis for further investigation.

Indexed as

AnimalsConotoxinsConus SnailCysteineMass SpectrometryNeurotoxinsProtein Processing, Post-TranslationalProtein Sorting SignalsProteomeRNA, MessengerRNA PrecursorsVenomsConotoxinsCysteineNeurotoxinsProtein Sorting SignalsProteomeRNA, MessengerRNA PrecursorsVenoms

Identifiers

PMID24126141
PMCPMC3879607
OpenAlexW2122577070

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.