Evidence map›Paper›PMID 24124463›Full record

ArticlePloS one2013

Competitive interactions of ligands and macromolecular crowders with maltose binding protein.

Andrew C Miklos, Matthew Sumpter, Huan-Xiang Zhou

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  5. High-ResolutionBiochemistry · 2020
    Article
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  11. Review
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  13. Challenges in structural approaches to cell modeling.Journal of molecular biology · 2016
    Review
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Andrew C MiklosInstitute of Molecular Biophysics, Florida State University, Tallahassee, Florida, United States of America.
Matthew Sumpter
Huan-Xiang Zhou
Florida State University · US

Funding

Modeling Crowding and Confinement of Cellular EnvironmentsR01GM088187 · NIGMS · FLORIDA STATE UNIVERSITY · PI ZHOU, HUAN-XIANG · 2010 to 2015
$1.6M
Protein-Ligand Binding Equilibrium and Mechanism under Macromolecular CrowdingF32GM103217 · NIGMS · FLORIDA STATE UNIVERSITY · PI MIKLOS, ANDREW CHARLES · 2012 to 2013
$101k
NIGMS NIH HHS F32 GM103217NIGMS NIH HHS R01 GM088187NIGMS NIH HHS R01 GM88187
6 · The paper itself

Abstract

Cellular signaling involves a cascade of recognition events occurring in a complex environment with high concentrations of proteins, polysaccharides, and other macromolecules. The influence of macromolecular crowders on protein binding affinity through hard-core repulsion is well studied, and possible contributions of protein-crowder soft attraction have been implicated recently. Here we present direct evidence for weak association of maltose binding protein (MBP) with a polysaccharide crowder Ficoll, and that this association effectively competes with the binding of the natural ligand, maltose. Titration data over wide ranges of maltose and Ficoll concentrations fit well with a three-state competitive binding model. Broadening of MBP (1)H-(15)N TROSY spectra by the addition of Ficoll indicates weak protein-crowder association, and subsequent recovery of sharp NMR peaks upon addition of maltose indicates that the interactions of the crowder and the ligand with MBP are competitive. We hypothesize that, in the Escherichia coli periplasm, the competitive interactions of polysaccharides and maltose with MBP could allow MBP to shuttle between the peptidoglycan attached to the outer membrane and the ATP-binding cassette transporter in the inner membrane.

Indexed as

Escherichia coliEscherichia coli ProteinsMagnetic Resonance SpectroscopyMaltose-Binding ProteinsProtein BindingProtein Structure, SecondaryEscherichia coli ProteinsMaltose-Binding Proteins

Identifiers

PMID24124463
PMCPMC3790770
OpenAlexW2010701629

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.