ReviewGenomics & informatics2013
Analytical tools and databases for metagenomics in the next-generation sequencing era.
Review in Genomics & informatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
46 citing papers in PubMed.
- Insights into the microbiome of mine drainage from the Mária mine in Rožňava, Slovakia: a metagenomic approach.Frontiers in microbiology · 2025Article
- The Rising Role of Omics and Meta-Omics in Table Olive Research.Foods (Basel, Switzerland) · 2023Review
- Bacterial diversity in the aquatic system in India based on metagenome analysis-a critical review.Environmental science and pollution research international · 2023Review
- Metagenomics Next Generation Sequencing (mNGS): An Exciting Tool for Early and Accurate Diagnostic of Fungal Pathogens in Plants.Journal of fungi (Basel, Switzerland) · 2022Review
- Oligotrophy vs. copiotrophy in an alkaline and saline habitat of Lonar Lake.Frontiers in microbiology · 2022Article
- Combining omics tools for the characterization of the microbiota of diverse vinegars obtained by submerged culture: 16S rRNA amplicon sequencing and MALDI-TOF MS.Frontiers in microbiology · 2022Article
- Extension of the shelf-life of fresh pasta using modified atmosphere packaging and bioprotective cultures.Frontiers in microbiology · 2022Article
- Evaluating the Prevalence of Foodborne Pathogens in Livestock Using Metagenomics Approach.Journal of microbiology and biotechnology · 2021Article
- Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14).Proteins · 2021Article
- The endophytome (plant-associated microbiome): methodological approaches, biological aspects, and biotech applications.World journal of microbiology & biotechnology · 2021Review
- Current Methods, Common Practices, and Perspectives in Tracking and Monitoring Bioinoculants in Soil.Frontiers in microbiology · 2021Review
- Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences.Frontiers in microbiology · 2021Article
- SeSaMe: Metagenome Sequence Classification of Arbuscular Mycorrhizal Fungi-associated Microorganisms.Genomics, proteomics & bioinformatics · 2020Article
- Human microbiome: an academic update on human body site specific surveillance and its possible role.Archives of microbiology · 2020Review
- HoSeIn: A Workflow for Integrating Various Homology Search Results from Metagenomic and Metatranscriptomic Sequence Datasets.Bio-protocol · 2020Article
- Cyanobacterial biodiversity of semiarid public drinking water supply reservoirs assessed via next-generation DNA sequencing technology.Journal of microbiology (Seoul, Korea) · 2019Article
- The effect of 16S rRNA region choice on bacterial community metabarcoding results.Scientific data · 2019Article
- NFATC3-PLA2G15 Fusion Transcript Identified by RNA Sequencing Promotes Tumor Invasion and Proliferation in Colorectal Cancer Cell Lines.Cancer research and treatment · 2019Article
- Diversity, Ecology, and Prevalence of Antimicrobials in Nature.Frontiers in microbiology · 2019Review
- Genetic and functional diversity of double-stranded DNA viruses in a tropical monsoonal estuary, India.Scientific reports · 2018Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Metagenomics has become one of the indispensable tools in microbial ecology for the last few decades, and a new revolution in metagenomic studies is now about to begin, with the help of recent advances of sequencing techniques. The massive data production and substantial cost reduction in next-generation sequencing have led to the rapid growth of metagenomic research both quantitatively and qualitatively. It is evident that metagenomics will be a standard tool for studying the diversity and function of microbes in the near future, as fingerprinting methods did previously. As the speed of data accumulation is accelerating, bioinformatic tools and associated databases for handling those datasets have become more urgent and necessary. To facilitate the bioinformatics analysis of metagenomic data, we review some recent tools and databases that are used widely in this field and give insights into the current challenges and future of metagenomics from a bioinformatics perspective.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.