Evidence map›Paper›PMID 24123890›Full record

ArticleHuman mutation2014

Genetic and functional analyses of ZIC3 variants in congenital heart disease.

Jason Cowan, Muhammad Tariq, Stephanie M Ware

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Observational
  10. Article
  11. Genetic Basis of Human Congenital Heart Disease.Cold Spring Harbor perspectives in biology · 2020
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. ZIC3 in Heterotaxy.Advances in experimental medicine and biology · 2018
    Review
  18. Noncompaction cardiomyopathy and heterotaxy syndrome.Progress in pediatric cardiology · 2017
    Article
  19. Review
  20. Copy number variation as a genetic basis for heterotaxy and heterotaxy-spectrum congenital heart defects.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jason Cowan
Muhammad Tariq
Stephanie M Ware
Cincinnati Children's Hospital Medical Center · US

Funding

Role of the Embryonic Node in Cardiac Development and Congenital Heart DiseaseR01HL088639 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI WARE, STEPHANIE M · 2007 to 2011
$2.0M
NHLBI NIH HHS HL088639-03S1NHLBI NIH HHS R01 HL088639
6 · The paper itself

Abstract

Mutations in zinc-finger in cerebellum 3 (ZIC3) result in heterotaxy or isolated congenital heart disease (CHD). The majority of reported mutations cluster in zinc-finger domains. We previously demonstrated that many of these lead to aberrant ZIC3 subcellular trafficking. A relative paucity of N- and C-terminal mutations has, however, prevented similar analyses in these regions. Notably, an N-terminal polyalanine expansion was recently identified in a patient with VACTERL, suggesting a potentially distinct function for this domain. Here we report ZIC3 sequencing results from 440 unrelated patients with heterotaxy and CHD, the largest cohort yet examined. Variants were identified in 5.2% of sporadic male cases. This rate exceeds previous estimates of 1% and has important clinical implications for genetic testing and risk-based counseling. Eight of 11 were novel, including 5 N-terminal variants. Subsequent functional analyses included four additional reported but untested variants. Aberrant cytoplasmic localization and decreased luciferase transactivation were observed for all zinc-finger variants, but not for downstream or in-frame upstream variants, including both analyzed polyalanine expansions. Collectively, these results expand the ZIC3 mutational spectrum, support a higher than expected prevalence in sporadic cases, and suggest alternative functions for terminal mutations, highlighting a need for further study of these domains.

Indexed as

AnimalsCodon, NonsenseCohort StudiesFemaleFrameshift MutationGenetic VariationHeart Defects, CongenitalHeterotaxy SyndromeHomeodomain ProteinsHumansMaleMiceMutation, MissenseNIH 3T3 CellsPeptidesPolymorphism, Single NucleotideCodon, NonsenseHomeodomain ProteinsPeptidespolyalanineTranscription FactorsZIC3 protein, human

Identifiers

PMID24123890
PMCPMC3946352
OpenAlexW2059425453

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.