Evidence map›Paper›PMID 24122488›Full record

ArticleJournal of dental research2013

Molecular differences between chronic and aggressive periodontitis.

M Kebschull, P Guarnieri, R T Demmer, A L Boulesteix, P Pavlidis, P N Papapanou

Open access · greenAbstract read
In one paragraph

Article in Journal of dental research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 2 pooled it
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 2 syntheses or guidelines pooled it, 89 citations in OpenAlex.

  1. Definitions used for a healthy periodontium-A systematic review.International journal of dental hygiene · 2020
    Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Transcription-based comparison ofMicrobiology spectrum · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Wnt signaling in periodontitis.Clinical oral investigations · 2023
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  12. Article
  13. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

M KebschullDivision of Periodontics, Section of Oral and Diagnostic Sciences, Columbia University College of Dental Medicine, New York, NY, USA.
P Guarnieri
R T Demmer
A L Boulesteix
P Pavlidis
P N Papapanou
Columbia University · USHerbert Irving Comprehensive Cancer CenterUniversity of British Columbia · CAZimmer Biomet (Germany) · DE

Funding

Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
Neuroinformatics for gene expression: networks, function and meta-analysisR01GM076990 · NIGMS · UNIVERSITY OF BRITISH COLUMBIA · PI BIROL, INANC, PAVLIDIS, PAUL · 2005 to 2014
$2.0M
Gene Expression in Chronic and Aggressive PeriodontitisR01DE015649 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PAPAPANOU, PANOS N · 2004 to 2006
$1.8M
MicroRNA expression in gingival tissues in periodontal health and diseaseR21DE021820 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PAPAPANOU, PANOS N · 2012 to 2013
$432k
Periodontal Infections and Type 2 Diabetes Mellitus RiskK99DE018739 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DEMMER, RYAN T. · 2008 to 2009
$180k
NCATS NIH HHS UL1 TR000040NCATS NIH HHS UL1-TR000040NIDCR NIH HHS DE-015649NIDCR NIH HHS DE-021820NIDCR NIH HHS K99 DE-018739NIDCR NIH HHS K99 DE018739NIDCR NIH HHS R01 DE015649NIDCR NIH HHS R21 DE021820NIGMS NIH HHS R01 GM076990
6 · The paper itself

Abstract

The 2 major forms of periodontitis, chronic (CP) and aggressive (AgP), do not display sufficiently distinct histopathological characteristics or microbiological/immunological features. We used molecular profiling to explore biological differences between CP and AgP and subsequently carried out supervised classification using machine-learning algorithms including an internal validation. We used whole-genome gene expression profiles from 310 'healthy' or 'diseased' gingival tissue biopsies from 120 systemically healthy non-smokers, 65 with CP and 55 with AgP, each contributing with ≥ 2 'diseased' gingival papillae (n = 241; with bleeding-on-probing, probing depth ≥ 4 mm, and clinical attachment loss ≥ 3 mm), and, when available, a 'healthy' papilla (n = 69; no bleeding-on-probing, probing depth ≤ 4 mm, and clinical attachment loss ≤ 4 mm). Our analyses revealed limited differences between the gingival tissue transcriptional profiles of AgP and CP, with genes related to immune responses, apoptosis, and signal transduction overexpressed in AgP, and genes related to epithelial integrity and metabolism overexpressed in CP. Different classifying algorithms discriminated CP from AgP with an area under the curve ranging from 0.63 to 0.99. The small differences in gene expression and the highly variable classifier performance suggest limited dissimilarities between established AgP and CP lesions. Future analyses may facilitate the development of a novel, 'intrinsic' classification of periodontitis based on molecular profiling.

Indexed as

Aggressive PeriodontitisAlgorithmsApoptosisArea Under CurveArtificial IntelligenceChronic PeriodontitisEpitheliumGene Expression ProfilingGingivaHumansMicroarray AnalysisPeriodontal Attachment LossPeriodontal IndexPeriodontal PocketROC CurveSensitivity and Specificityclassificationgene expressionmachine learningmicroarray analysispathogenesistranscriptome

Identifiers

PMID24122488
PMCPMC3834653
OpenAlexW2156740636

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.