Evidence map›Paper›PMID 24121511›Full record

ArticleThe Journal of biological chemistry2013

Enterocyte-specific regulation of the apical nutrient transporter SLC6A19 (B(0)AT1) by transcriptional and epigenetic networks.

Emrah Tümer, Angelika Bröer, Sarojini Balkrishna, Torsten Jülich, Stefan Bröer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

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  9. Nutrient sensing by absorptive and secretory progenies of small intestinal stem cells.American journal of physiology. Gastrointestinal and liver physiology · 2017
    Article
  10. Molecular mechanism(s) involved in differential expression of vitamin C transporters along the intestinal tract.American journal of physiology. Gastrointestinal and liver physiology · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Emrah TümerResearch School of Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia.
Angelika BröerResearch School of Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia.
Sarojini BalkrishnaResearch School of Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia.
Torsten JülichResearch School of Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia.
Stefan BröerResearch School of Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia. Electronic address: Stefan.broeer@anu.edu.au.
Australian National University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterocytes are specialized to absorb nutrients from the lumen of the small intestine by expressing a select set of genes to maximize the uptake of nutrients. They develop from stem cells in the crypt and differentiate into mature enterocytes while moving along the crypt-villus axis. Using the Slc6a19 gene as an example, encoding the neutral amino acid transporter B(0)AT1, we studied regulation of the gene by transcription factors and epigenetic factors in the intestine. To investigate this question, we used a fractionation method to separate mature enterocytes from crypt cells and analyzed gene expression. Transcription factors HNF1a and HNF4a activate transcription of the Slc6a19 gene in villus enterocytes, whereas high levels of SOX9 repress expression in the crypts. CpG dinucleotides in the proximal promoter were highly methylated in the crypt and fully de-methylated in the villus. Furthermore, histone modification H3K27Ac, indicating an active promoter, was prevalent in villus cells but barely detectable in crypt cells. The results suggest that Slc6a19 expression in the intestine is regulated at three different levels involving promoter methylation, histone modification, and opposing transcription factors.

Indexed as

Amino Acid Transport Systems, NeutralAnimalsCells, CulturedDNA MethylationEnterocytesEpigenesis, GeneticHepatocyte Nuclear Factor 1-alphaHepatocyte Nuclear Factor 4HistonesMicePromoter Regions, GeneticProtein Processing, Post-TranslationalSOX9 Transcription FactorTranscription, GeneticAmino Acid Transport Systems, NeutralHepatocyte Nuclear Factor 1-alphaHepatocyte Nuclear Factor 4HistonesHnf1a protein, mouseHnf4a protein, mouseSLC6A19 protein, mouseSox9 protein, mouseSOX9 Transcription FactorAmino Acid TransportDNA MethylationEpithelial CellHistone ModificationHNF-4PromotersTranscription Regulation

Identifiers

PMID24121511
PMCPMC3837124
OpenAlexW2026712046

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.